plot.neuron
(Package: nat) :
Plot a 2D projection of a neuron
Plot a 2D projection of a neuron
● Data Source:
CranContrib
● Keywords:
● Alias: plot.neuron
●
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affmat2cmtkparams
(Package: nat) :
Decompose homogeneous affine matrix to CMTK registration parameters
Decompose homogeneous affine matrix to CMTK registration parameters
● Data Source:
CranContrib
● Keywords:
● Alias: affmat2cmtkparams
●
0 images
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cmtk.version
(Package: nat) :
Return cmtk version or test for presence of at least a specific version
Return cmtk version or test for presence of at least a specific version
● Data Source:
CranContrib
● Keywords:
● Alias: cmtk.version
●
0 images
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is.nrrd
(Package: nat) :
Check if a file is a NRRD file
Check if a file is a NRRD file
● Data Source:
CranContrib
● Keywords:
● Alias: is.nrrd
●
0 images
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coord2ind
(Package: nat) :
Find 1D indices into a 3D image given spatial coordinates
Find 1D indices into a 3D image given spatial coordinates
● Data Source:
CranContrib
● Keywords:
● Alias: coord2ind, coord2ind.default
●
0 images
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imexpand.grid
(Package: nat) :
Convert locations of im3d voxel grid into XYZ coordinates
Convert locations of im3d voxel grid into XYZ coordinates
● Data Source:
CranContrib
● Keywords:
● Alias: imexpand.grid
●
0 images
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plot.neuronlist
(Package: nat) :
2D plots of the elements in a neuronlist, optionally using a subset
2D plots of the elements in a neuronlist, optionally using a subset expression
● Data Source:
CranContrib
● Keywords:
● Alias: plot.neuronlist
●
0 images
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ngraph
(Package: nat) :
ngraph: a graph to encode a neuron's connectivity
the ngraph class contains a (completely general) graph representation of a neuron's connectivity in an igraph object. It may additionally contain vertex label or position data. See details.
● Data Source:
CranContrib
● Keywords:
● Alias: as.ngraph, as.ngraph.data.frame, as.ngraph.neuron, ngraph
●
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neuronlist
(Package: nat) :
Create a neuronlist from zero or more neurons
neuronlist objects consist of a list of neuron objects along with an optional attached dataframe containing information about the neurons. neuronlist objects can be indexed using their name or the number of the neuron like a regular list. Both the list itself and the attached data.frame must have the same unique (row)names. If the [ operator is used to index the list, the attached dataframe will also be subsetted.
● Data Source:
CranContrib
● Keywords:
● Alias: neuronlist
●
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nlapply
(Package: nat) :
lapply and mapply for neuronlists (with optional parallelisation)
versions of lapply and mapply that look after the class and attached dataframe of neuronlist objects. nlapply can apply a function to only a subset of elements in the input neuronlist. Internally nlapply uses plyr::llply thereby enabling progress bars and simple parallelisation (see plyr section and examples).
● Data Source:
CranContrib
● Keywords:
● Alias: nlapply, nmapply
●
0 images
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