R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
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Data set

Classification

Results 1 - 10 of 43 found.
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mmindex (Package: oligo) : Accessors for PM, MM or background probes indices.

Extracts the indexes for PM, MM or background probes.

● Data Source: BioConductor
● Keywords: manip
● Alias: bgindex, bgindex,DBPDInfo-method, bgindex,FeatureSet-method, mmindex, mmindex,DBPDInfo-method, mmindex,FeatureSet-method, pmindex, pmindex,DBPDInfo-method, pmindex,FeatureSet-method, pmindex,GenericFeatureSet-method, pmindex,GenericPDInfo-method
● 0 images

mm (Package: oligo) : Accessors and replacement methods for the intensity/PM/MM/BG matrices.

Accessors and replacement methods for the PM/MM/BG matrices.

● Data Source: BioConductor
● Keywords: manip
● Alias: bg, bg,FeatureSet-method, bg,TilingFeatureSet-method, bg<-, bg<-,FeatureSet,ff_matrix-method, bg<-,FeatureSet,matrix-method, bg<-,TilingFeatureSet,array-method, intensity, intensity,FeatureSet-method, intensity<-, intensity<-,FeatureSet-method, mm, mm,FeatureSet-method, mm,TilingFeatureSet-method, mm<-, mm<-,FeatureSet,ANY,ANY,ff_matrix-method, mm<-,FeatureSet,ANY,ANY,matrix-method, mm<-,TilingFeatureSet,ANY,ANY,array-method, pm, pm,FeatureSet-method, pm,GenericFeatureSet-method, pm,TilingFeatureSet-method, pm<-, pm<-,FeatureSet,ANY,ANY,ff_matrix-method, pm<-,FeatureSet,ANY,ANY,matrix-method, pm<-,GenericFeatureSet,ANY,ANY,ff_matrix-method, pm<-,GenericFeatureSet,ANY,ANY,matrix-method, pm<-,TilingFeatureSet,ANY,ANY,array-method
● 0 images

MAplot (Package: oligo) : MA plots

Create MA plots using a reference array (if one channel) or using channel2 as reference (if two channel).

● Data Source: BioConductor
● Keywords: hplot, loess, methods, smooth
● Alias: MAplot, MAplot,ExpressionSet-method, MAplot,FeatureSet-method, MAplot,PLMset-method, MAplot,TilingFeatureSet-method, MAplot,matrix-method, MAplot-methods
● 1 images

mmSequence (Package: oligo) : Probe Sequeces

Accessor to the (PM/MM/background) probe sequences.

● Data Source: BioConductor
● Keywords: manip
● Alias: bgSequence, bgSequence,DBPDInfo-method, bgSequence,ExonFeatureSet-method, bgSequence,FeatureSet-method, bgSequence,GeneFeatureSet-method, mmSequence, mmSequence,AffySNPPDInfo-method, mmSequence,DBPDInfo-method, mmSequence,FeatureSet-method, pmSequence, pmSequence,AffyGenePDInfo-method, pmSequence,AffySNPPDInfo-method, pmSequence,DBPDInfo-method, pmSequence,ExonFeatureSet-method, pmSequence,FeatureSet-method, pmSequence,GeneFeatureSet-method, pmSequence,stArrayDBPDInfo-method
● 0 images

basecontent (Package: oligo) : Sequence Base Contents

Function to compute the amounts of each nucleotide in a sequence.

● Data Source: BioConductor
● Keywords: manip
● Alias: basecontent
● 0 images

basicPLM (Package: oligo) :

Simplified interface to PLM.

● Data Source: BioConductor
● Keywords: manip
● Alias: basicPLM
● 0 images

basicRMA (Package: oligo) :

Simple interface to RMA.

● Data Source: BioConductor
● Keywords: manip
● Alias: basicRMA
● 0 images

boxplot (Package: oligo) : Boxplot

Boxplot for observed (log-)intensities in a FeatureSet-like object (ExpressionFeatureSet, ExonFeatureSet, SnpFeatureSet, TilingFeatureSet) and ExpressionSet.

● Data Source: BioConductor
● Keywords: hplot, methods
● Alias: boxplot, boxplot,ExpressionSet-method, boxplot,FeatureSet-method, boxplot,PLMset-method, boxplot-methods
● 0 images

chromosome (Package: oligo) : Accessor for chromosome information

Returns chromosome information.

● Data Source: BioConductor
● Keywords: manip
● Alias: chromosome, chromosome<-, chromosome<-,AnnotatedDataFrame,character-method, pmChr, pmChr,ExonFeatureSet-method, pmChr,FeatureSet-method, pmChr,GeneFeatureSet-method
● 0 images

darkColors (Package: oligo) :

Create set of colors, interpolating through a set of preferred colors.

● Data Source: BioConductor
● Keywords: hplot
● Alias: darkColors, divColors, seqColors, seqColors2
● 1 images