getCSMF
(Package: openVA) :
Obtain CSMF from fitted model
Obtain CSMF from fitted model
● Data Source:
CranContrib
● Keywords:
● Alias: getCSMF
●
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ConvertData
(Package: openVA) :
Converting Input data with different coding scheme to standard format
Converting Input data with different coding scheme to standard format
● Data Source:
CranContrib
● Keywords:
● Alias: ConvertData
●
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getPHMRC_url
(Package: openVA) :
Get the URL to the PHMRC dataset
Get the URL to the PHMRC dataset
● Data Source:
CranContrib
● Keywords:
● Alias: getPHMRC_url
●
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codeVA
(Package: openVA) :
Running automated method on VA data
Running automated method on VA data
● Data Source:
CranContrib
● Keywords: InSilicoVA, InterVA4, Tariff
● Alias: codeVA
●
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plotVA
(Package: openVA) :
Plot top CSMF for a fitted model
Plot top CSMF for a fitted model
● Data Source:
CranContrib
● Keywords:
● Alias: plotVA
●
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getIndivProb
(Package: openVA) :
Extract individual distribution of cause of death
Extract individual distribution of cause of death
● Data Source:
CranContrib
● Keywords:
● Alias: getIndivProb
●
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ConvertData.phmrc
(Package: openVA) :
Convert standard PHMRC data into binary indicator format
The PHMRC data and the description of the format could be found at http://ghdx.healthdata.org/record/population-health-metrics-research-consortium-gold-standard-verbal-autopsy-data-2005-2011. This function convert the symptoms into binary indicators of three levels: Yes, No, and Missing. The health care experience (HCE) and free-text columns, i.e., columns named "word_****", are not considered in the current version of data conversion.
● Data Source:
CranContrib
● Keywords:
● Alias: ConvertData.phmrc
●
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interVA.train
(Package: openVA) :
Extended InterVA method for non-standard input
Extended InterVA method for non-standard input
● Data Source:
CranContrib
● Keywords: InterVA4
● Alias: interVA.train
●
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getTopCOD
(Package: openVA) :
Extract the most likely cause of death
Extract the most likely cause of death
● Data Source:
CranContrib
● Keywords:
● Alias: getTopCOD
●
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stackplotVA
(Package: openVA) :
plot grouped CSMF from a "insilico" object
Produce bar plot of the CSMFs for a fitted "insilico" object in broader groups.
● Data Source:
CranContrib
● Keywords:
● Alias: stackplotVA
●
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