pedigreemm
(Package: pedigreemm) :
Fit mixed-effects models incorporating pedigrees
Fit linear or generalized linear mixed models incorporating the effects of a pedigree.
● Data Source:
CranContrib
● Keywords: models
● Alias: pedigreemm
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Objects of class "pedigree" represent a set of individuals that can have two parents including their parent-child relations. The terminology has been taken from cattle breeding. The "pedinbred" class is an extension of the pedigree class with an additional slot of the inbreeding coefficients.
● Data Source:
CranContrib
● Keywords: classes
● Alias: pedigree-class, pedinbred-class
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editPed
(Package: pedigreemm) :
Complete and Order a Pedigree
This function helps to prepare a pedigree to generate a pedigree object
● Data Source:
CranContrib
● Keywords: algebra, array
● Alias: editPed
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Dmat
(Package: pedigreemm) :
vector of the diagonal for the D matrix from the decomposition A= TDT'
numeric vector that should be the diagonal elements of the diagonal matrix D
● Data Source:
CranContrib
● Keywords: misc
● Alias: Dmat
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pedigreemm-class
(Package: pedigreemm) :
Pedigree-based mixed-effects model fits
A mixed-effects model fit by pedigreemm. This class extends class "merMod" class and includes one additional slot, relfac, which is a list of (left) Cholesky factors of the relationship matrices derived from "pedigree" objects.
● Data Source:
CranContrib
● Keywords: classes
● Alias: fitted,pedigreemm-method, pedigreemm-class, ranef,pedigreemm-method, residuals,pedigreemm-method
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inbreeding
(Package: pedigreemm) :
Inbreeding coefficients from a pedigree...
Inbreeding coefficients from a pedigree
● Data Source:
CranContrib
● Keywords: misc
● Alias: inbreeding
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relfactor
(Package: pedigreemm) :
Relationship factor from a pedigree...
Relationship factor from a pedigree
● Data Source:
CranContrib
● Keywords: algebra, array
● Alias: relfactor
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getA
(Package: pedigreemm) :
Additive Relationship Matrix
Additive relationship matrix from a pedigree
● Data Source:
CranContrib
● Keywords: algebra, array
● Alias: getA
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getAInv
(Package: pedigreemm) :
Inverse of the relationship matrix
Inverse of the Relationship matrix from a pedigree
● Data Source:
CranContrib
● Keywords: algebra, array
● Alias: getAInv
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Construct an object of class "pedigree", more conveniently than by new("pedigree", ....).
● Data Source:
CranContrib
● Keywords: misc
● Alias: pedigree
●
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providing 
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