Last data update: 2014.03.03
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R Release (3.2.3)
CranContrib
BioConductor
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SMO (statistical methods ontology)
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how
(Package: permute ) :
How to define a permutation design?
Utility functions to describe unrestricted and restricted permutation designs for time series, line transects, spatial grids and blocking factors.
● Data Source:
CranContrib
● Keywords: utils
● Alias: Blocks, Plots, Within, how, print.how
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0 images
nobs-methods
(Package: permute ) :
Number of observations in a given object
nobs
is a generic function to return the number of observations from a model. shuffle
provides a few methods for other types of data object in R.
● Data Source:
CranContrib
● Keywords:
● Alias: nobs-methods, nobs.data.frame, nobs.integer, nobs.matrix, nobs.numeric
●
0 images
get-methods
(Package: permute ) :
Extractor functions to access components of a permutation design
Simple functions to allow abstracted access to components of a permutation design, for example as returned by how
. Whilst many of these are very simple index opertations on a list, using these rather than directly accessing that list allows the internal representation of the permutation design to change without breaking code.
● Data Source:
CranContrib
● Keywords: methods, utils
● Alias: get-methods, getAllperms, getAllperms.default, getAllperms.how, getBlocks, getBlocks.default, getBlocks.how, getBlocks.permControl, getCol, getCol.Plots, getCol.Within, getCol.default, getCol.how, getCol.permControl, getComplete, getComplete.default, getComplete.how, getComplete.permControl, getConstant, getConstant.Within, getConstant.default, getConstant.how, getConstant.permControl, getDim, getDim.Plots, getDim.Within, getDim.default, getDim.how, getDim.permControl, getMake, getMake.default, getMake.how, getMaxperm, getMaxperm.default, getMaxperm.how, getMaxperm.permControl, getMinperm, getMinperm.default, getMinperm.how, getMinperm.permControl, getMirror, getMirror.Plots, getMirror.Within, getMirror.default, getMirror.how, getMirror.permControl, getNperm, getNperm.default, getNperm.how, getNperm.permControl, getObserved, getObserved.default, getObserved.how, getPlots, getPlots.default, getPlots.how, getPlots.permControl, getRow, getRow.Plots, getRow.Within, getRow.default, getRow.how, getRow.permControl, getStrata, getStrata.Plots, getStrata.default, getStrata.how, getStrata.permControl, getType, getType.Plots, getType.Within, getType.default, getType.how, getType.permControl, getWithin, getWithin.default, getWithin.how, getWithin.permControl
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0 images
allPerms
(Package: permute ) :
Complete enumeration of all possible permutations
allPerms
is a utility function to return the set of permutations for a given R object and a specified permutation design.
● Data Source:
CranContrib
● Keywords:
● Alias: allPerms, as.matrix.allPerms, print.allPerms, print.summary.allPerms, summary.allPerms
●
0 images
shuffleSet
returns a set of nset
permutations from the specified design. The main purpose of the function is to circumvent the overhead of repeatedly calling shuffle
to generate a set of permutations.
● Data Source:
CranContrib
● Keywords: design, htest
● Alias: as.matrix.permutationMatrix, shuffleSet
●
0 images
numPerms
(Package: permute ) :
Number of possible permutations for a given object
numPerms
calculates the maximum number of permutations possible under the current permutation scheme.
● Data Source:
CranContrib
● Keywords:
● Alias: numPerms
●
0 images
set-methods
(Package: permute ) :
Replacement functions to set components of a permutation design
Simple functions to allow abstracted replacement of components of a permutation design, for example as returned by how
. In addition to performing replacement of components of the list returned by how
, these replacement function also update the matched calls stored within the list to facilitate the use of update
by users.
● Data Source:
CranContrib
● Keywords: methods, utils
● Alias: set-methods, setAllperms<-, setAllperms<-.default, setAllperms<-.how, setAllperms<-.permControl, setBlocks<-, setBlocks<-.default, setBlocks<-.how, setBlocks<-.permControl, setCol<-, setCol<-.Plots, setCol<-.Within, setCol<-.default, setCol<-.how, setComplete<-, setComplete<-.default, setComplete<-.how, setComplete<-.permControl, setConstant<-, setConstant<-.Plots, setConstant<-.Within, setConstant<-.default, setConstant<-.how, setDim<-, setDim<-.Plots, setDim<-.Within, setDim<-.default, setDim<-.how, setMake<-, setMake<-.default, setMake<-.how, setMaxperm<-, setMaxperm<-.default, setMaxperm<-.how, setMaxperm<-.permControl, setMinperm<-, setMinperm<-.default, setMinperm<-.how, setMinperm<-.permControl, setMirror<-, setMirror<-.Plots, setMirror<-.Within, setMirror<-.default, setMirror<-.how, setNperm<-, setNperm<-.default, setNperm<-.how, setNperm<-.permControl, setObserved<-, setObserved<-.default, setObserved<-.how, setPlots<-, setPlots<-.default, setPlots<-.how, setRow<-, setRow<-.Plots, setRow<-.Within, setRow<-.default, setRow<-.how, setStrata<-, setStrata<-.Plots, setStrata<-.default, setStrata<-.how, setType<-, setType<-.Plots, setType<-.Within, setType<-.default, setType<-.how, setWithin<-, setWithin<-.default, setWithin<-.how
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0 images
check
(Package: permute ) :
Utility functions for permutation schemes
check
provides checking of permutation schemes for validity. permuplot
produces a graphical representation of the selected permutation design.
● Data Source:
CranContrib
● Keywords: design, methods, utilities
● Alias: check, print.check, print.summary.check, summary.check
●
0 images
allUtils
(Package: permute ) :
Utility functions for complete enumeration of all possible
Utility functions to return the set of all permutations under different designs. For most practical applications, i.e. to combine designs permuting blocks and/or within blocks function allPerms
will be required.
● Data Source:
CranContrib
● Keywords:
● Alias: allFree, allGrid, allSeries, allStrata
●
0 images
shuffle
(Package: permute ) :
Unrestricted and restricted permutations
Unrestricted and restricted permutation designs for time series, line transects, spatial grids and blocking factors.
● Data Source:
CranContrib
● Keywords: design, htest
● Alias: permute, shuffle
●
0 images