A sequence file read in with readSeqFile is summarized by a C call. This is a base class with slots common to both FASTQSummary and FASTASummary. This is not usually instantiated directly.
calcKL-methods
(Package: qrqc) :
Calculate the Kullback-Leibler Divergence Between the k-mer
calcKL takes in an object that inherits from SequenceSummary that has a kmers slot, and returns the terms of the K-L divergence sum (which correspond to items in the sample space, in this case, k-mers).
geom_qlinerange
(Package: qrqc) :
Use Line Segments and Points to Plot Quality Statistics by Position in the Read
geom_qlinerange uses multiple line segments and points to plot quality ranges. By default the 10% and 90% range in plotted in grey, the quartile range in orange, and the mean as a point in blue. It is used in qualPlot.
getBase-methods
(Package: qrqc) :
Get a Data Frame of Base Frequency Data from a code{SequenceSummary
An object that inherits from class SequenceSummary contains base frequency data by position gathered by readSeqFile. getBase is an accessor function that reshapes the base frequency data by position into a data frame.
getBaseProp-methods
(Package: qrqc) :
Get a Data Frame of Base Proportion Data from a code{SequenceSummary
An object that inherits from class SequenceSummary contains base frequency data by position gathered by readSeqFile. getBaseProp is an accessor function that reshapes the base frequency data by position into a data frame and calculates the proportions of each base per position.
getGC-methods
(Package: qrqc) :
Get a Data Frame of GC Content from a code{SequenceSummary
An object that inherits from class SequenceSummary contains base frequency data by position gathered by readSeqFile. getGC is an accessor function that reshapes the base frequency data into a data frame and returns the GC content by position.
providing 
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