MATScore
(Package: rMAT) :
Detection of enriched regions
This function is used to compute the rMAT scores following normalization of expression values in order to locate putative enriched regions. This function is now defunct now defunct and you should instead use 'computeMATScore'.
NormalizeProbes
(Package: rMAT) :
Normalize tiling array data using sequence information
This function is used to normalize tiling array data using sequence information. Users can chose between two different normalization methods. Please refer to the arguments section below.
Reading the header of a specified sequence in the BPMAP file. Several sequences could be stored in a single Affymetrix Tiling Array. For example, an array could contain probes from Chromosome 21 and Chromosome 22. The sequenceNum uniquely specifies a sequence. Information about this sequence could be determined in this function. The total number of sequences a tiling array contains can be determined in ReadBPMAPHeader(fileName). The sequenceNum indexes from 0 to (total number of sequences -1).
This function is used to compute the rMAT scores following normalization of expression values in order to locate putative enriched regions. This function is now defunct now defunct and you should instead use 'computeMATScore'.
tilingSet
(Package: rMAT) :
This object contains an ExpressionSet
This object contains an ExpressionSet and has the following additional slots: genomeName, featureSequence, featurePosition, featureChromosome, featureCopyNumber
providing 
.