R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 40 found.
[1] < 1 2 3 4 > [4] Sort:

characterToBSGenome (Package: regioneR) : characterToBSGenome

Given a character string with the "name" of a genome, it returns a BSgenome object if available.

● Data Source: BioConductor
● Keywords:
● Alias: characterToBSGenome
● 0 images

circularRandomizeRegions (Package: regioneR) : Circular Randomize Regions

Given a set of regions A and a genome, this function returns a new set of regions created by applying a random spin to each chromosome.

● Data Source: BioConductor
● Keywords:
● Alias: circularRandomizeRegions
● 0 images

commonRegions (Package: regioneR) : Common Regions

Returns the regions that are common in two region sets, its intersection.

● Data Source: BioConductor
● Keywords:
● Alias: commonRegions
● 1 images

createFunctionsList (Package: regioneR) : Create Functions List

Partially applies (the standard Curry function in functional programming) a list of arguments to a function and returns a list of preapplied functions. The result of this function is a list of functions suitable for the multiple evaluation functions in permTest.

● Data Source: BioConductor
● Keywords:
● Alias: createFunctionsList
● 0 images

createRandomRegions (Package: regioneR) : Create Random Regions

Creates a set of random regions with a given mean size and standard deviation.

● Data Source: BioConductor
● Keywords:
● Alias: createRandomRegions
● 0 images

emptyCacheRegioneR (Package: regioneR) : Empty Cache regioneR

Empties the caches used by the memoised function in the regioneR package.

● Data Source: BioConductor
● Keywords:
● Alias: emptyCacheRegioneR
● 0 images

extendRegions (Package: regioneR) : Extend Regions

Extends the regions a number of bases at each end. Negative numbers will reduce the region instead of enlarging it.

● Data Source: BioConductor
● Keywords:
● Alias: extendRegions
● 1 images

filterChromosomes (Package: regioneR) : filterChromosomes

Filters the chromosomes in a region set. It can either filter using a predefined chromosome set (e.g. "autosomal chromosomes in Homo sapiens") or using a custom chromosome set (e.g. only chromosomes "chr22" and "chrX")

● Data Source: BioConductor
● Keywords:
● Alias: filterChromosomes
● 0 images

getChromosomesByOrganism (Package: regioneR) : getChromosomesByOrganism

Function to obtain a list of organisms with their canonical and (when applicable) the autosomal chromosome names. This function is not usually used by the end user directly but through the filterChromosomes function.

● Data Source: BioConductor
● Keywords:
● Alias: getChromosomesByOrganism
● 0 images

getGenome (Package: regioneR) : getGenome

Function to obtain a genome

● Data Source: BioConductor
● Keywords:
● Alias: getGenome
● 0 images