|
Various plots of genomic coverage for experiments.
● Data Source:
BioConductor
● Keywords:
● Alias: ghistogram, plotCoverageHistogram, plotExonCoverage, plotGeneCoverage, plotGeneExonCoverage, plotRegionCoverage, plotSI
●
0 images
|
|
Finds all the reads for a genomic range
● Data Source:
BioConductor
● Keywords:
● Alias: readsInRange
●
0 images
|
regionBasedCoverage
(Package: rnaSeqMap) :
regionBasedCoverage - transformation of the region coverage by the Lindell-Aumann regions
The function builds a NucleotideDistr object from another object of coverage, using sequential call of Lindell-Aumann algorithm on the same data with a sequence of mi-levels. Each nucleotide is assigned the maximum mi-value of a region that covers it.
● Data Source:
BioConductor
● Keywords:
● Alias: regionBasedCoverage
●
0 images
|
|
Finds all the reads for a genomic range
● Data Source:
BioConductor
● Keywords:
● Alias: gcoverage, regionCoverage
●
0 images
|
setData
(Package: rnaSeqMap) :
Data accessor function for rnaSeqMap objects containing 'data' field
This function sets the 'data' field from one rnaSeqMap object with 'data' field from the other one.
● Data Source:
BioConductor
● Keywords:
● Alias: setData
●
0 images
|
setSAXPYData
(Package: rnaSeqMap) :
Data accessor function for rnaSeqMap objects containing 'data' field
This function sets the 'data' field at i position. The new value is the old one multiplied by a iParam.
● Data Source:
BioConductor
● Keywords:
● Alias: setSAXPYData
●
0 images
|
Sets the species name for chromosomes X, Y and MT translation into consecutive numbers. If you use xmap.connect, no need to call setSpecies. Both set the internal variable of xmapcore.
● Data Source:
BioConductor
● Keywords:
● Alias: setSpecies
●
0 images
|
simplePlot
(Package: rnaSeqMap) :
simplePlot - quick plot for the coverages
Plots 2 or 3 coverages with fixed colors.
● Data Source:
BioConductor
● Keywords:
● Alias: simplePlot
●
0 images
|
|
Finds all the intergenic spaces in the given chromosome region
● Data Source:
BioConductor
● Keywords:
● Alias: spaceInChromosome
●
0 images
|
NDplots
(Package: rnaSeqMap) :
Genomic plots based upon NucleotideDistr objects
Various plots of genomic coverage for data from NucleotideDistr objects
● Data Source:
BioConductor
● Keywords:
● Alias: distrCOVPlot, distrCOVPlotg, distrSIPlot
●
0 images
|
providing 
.