R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
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Results 1 - 10 of 10 found.
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ChIPprofile-class (Package: soGGi) : The soggi function and ChIPprofile object.

Manual for soggi and ChIPprofile object

● Data Source: BioConductor
● Keywords:
● Alias: ChIPprofile, ChIPprofile-ChIPprofile, ChIPprofile-class, regionPlot, soggi
● 0 images

Ops,ChIPprofile,ChIPprofile-method (Package: soGGi) : Arithmetic operations

Arithmetic operations

● Data Source: BioConductor
● Keywords:
● Alias: Ops,ChIPprofile,ChIPprofile-method, Ops,ChIPprofile,numeric-method, Ops,numeric,ChIPprofile-method, log,ChIPprofile-method, log2,ChIPprofile-method, mean,ChIPprofile-method
● 0 images

findconsensusRegions (Package: soGGi) : Plot coverage of points or regions.

Plot coverage of points or regions.

● Data Source: BioConductor
● Keywords:
● Alias: findconsensusRegions, summitPipeline
● 0 images

groupByOverlaps (Package: soGGi) : Create GRangeslist from all combinations of GRanges

Create GRangeslist from all combinations of GRanges

● Data Source: BioConductor
● Keywords:
● Alias: groupByOverlaps
● 0 images

c,ChIPprofile-method (Package: soGGi) : Join, subset and manipulate ChIPprofile objects

Join, subset and manipulate ChIPprofile objects

● Data Source: BioConductor
● Keywords:
● Alias: $,ChIPprofile-method, [[,ChIPprofile,ANY,missing-method, c,ChIPprofile-method, cbind,ChIPprofile-method, rbind,ChIPprofile-method
● 0 images

normalise (Package: soGGi) : Normalise ChIPprofiles

Various normalisation methods for ChIPprofile objects

● Data Source: BioConductor
● Keywords:
● Alias: normalise, normalise,ChIPprofile,character,numeric-method, normalise,ChIPprofile-method, normalise.ChIPprofile
● 0 images

normaliseQuantiles (Package: soGGi) : Normalise quantile

Quantile normalisation across bins/regions.

● Data Source: BioConductor
● Keywords:
● Alias: normaliseQuantiles, normaliseQuantiles,ChIPprofile-method, normaliseQuantiles.ChIPprofile
● 0 images

orientBy (Package: soGGi) : Set strand by overlapping or nearest anchor GRanges

Set strand by overlapping or nearest anchor GRanges

● Data Source: BioConductor
● Keywords:
● Alias: orientBy
● 0 images

plotRegion (Package: soGGi) : Plot regions

A function to plot regions

● Data Source: BioConductor
● Keywords:
● Alias: plotRegion, plotRegion,ChIPprofile-method, plotRegion.ChIPprofile
● 1 images

pwmToCoverage (Package: soGGi) : PWM hits and motif scores as an RLElist

Creates rlelist of pwm hits.

● Data Source: BioConductor
● Keywords:
● Alias: makeMotifScoreRle, pwmToCoverage
● 0 images