R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
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Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 42 found.
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ordinDNA (Package: spider) : Calculates a Principal Components Ordination of genetic distances

Calculates Principical Coonrdinates Analysis on a matrix of genetic distances and plots an ordination of the first two major axes.

● Data Source: CranContrib
● Keywords: Barcoding
● Alias: ordinDNA
● 0 images

cgraph (Package: spider) : Complete graph

Creates a complete graph for the given cloud of vertices.

● Data Source: CranContrib
● Keywords: Visualisation
● Alias: cgraph
● 0 images

slideNucDiag (Package: spider) :

Calculates the number of diagnostic nucleotides in sliding windows.

● Data Source: CranContrib
● Keywords: Sliding window
● Alias: slideNucDiag
● 0 images

anoteropsis (Package: spider) : Cytochrome oxidase I (COI) sequences of New Zealand _Anoteropsis_ species

A set of 33 sequences of the mitochondrial protein-coding gene cytochrome oxidase I from 20 species of the New Zealand wolf spider genus Anoteropsis (Lycosidae) and two species of Artoria as outgroups. The sequences are available on GenBank as accession numbers AY059961 through AY059993.

● Data Source: CranContrib
● Keywords: Datasets
● Alias: anoteropsis
● 0 images

tree.comp (Package: spider) :

Compares the clades between two trees.

● Data Source: CranContrib
● Keywords: Utilities
● Alias: tree.comp
● 0 images

sarkar (Package: spider) : Dummy sequences illustrating the categories of diagnostic nucleotides

A set of 8 dummy sequences published in Sarkar et al 2008 to illustrate the different categories of diagnostic nucleotides.

● Data Source: CranContrib
● Keywords: Datasets
● Alias: sarkar
● 0 images

sppDist (Package: spider) : Intra and inter-specific distances

Separates a distance matrix into its inter- and intra-specific components.

● Data Source: CranContrib
● Keywords: Barcoding
● Alias: sppDist
● 0 images

titv (Package: spider) :

Calculates the number of pairwise transitions and transversions between sequences.

● Data Source: CranContrib
● Keywords: Utilities
● Alias: titv
● 0 images

plot.haploAccum (Package: spider) : Plotting haplotype accumulation curves

Plots the accumulation curves calculated by haploAccum.

● Data Source: CranContrib
● Keywords: Sampling
● Alias: plot.haploAccum
● 0 images

rmSingletons (Package: spider) :

A utility to detect and remove species represented only by singletons.

● Data Source: CranContrib
● Keywords: Utilities
● Alias: rmSingletons
● 0 images