R Graphical Manual

Last data update: 2014.03.03

Data Source

R Release (3.2.3)
CranContrib
BioConductor
All

Data Type

Packages
Functions
Images
Data set

Classification

Results 1 - 10 of 11 found.
[1] < 1 2 > [2] Sort:

OneStepBiweightAlgorithm (Package: sscore) : One-step Tukey's biweight

Computes one-step Tukey's biweight on a vector. Note that this implementation follows the Affymetrix code, which is different from the Tukey's biweight computed by the affy package.

● Data Source: BioConductor
● Keywords: manip
● Alias: OneStepBiweightAlgorithm
● 0 images

SScore (Package: sscore) : Compute S-Score values

Computes the S-Score values for a pair of Affymetrix GeneChips

● Data Source: BioConductor
● Keywords: manip
● Alias: SScore
● 0 images

SScoreBatch (Package: sscore) : Compute S-Score values

Computes the S-Score values for multiple pairs of Affymetrix GeneChips

● Data Source: BioConductor
● Keywords: manip
● Alias: SScoreBatch
● 0 images

computeAffxRawQ (Package: sscore) : Computes RawQ using affxparser routines

Computes the RawQ value of a single Affymetrix GeneChip

● Data Source: BioConductor
● Keywords: manip
● Alias: computeAffxRawQ
● 0 images

computeAffxSFandSDT (Package: sscore) : Compute SF and SDT values using affxparser routines

Computes the scaling factor (SF) and statistical difference threshold (SDT) values of Affymetrix GeneChips, for use in calculating S-Score values

● Data Source: BioConductor
● Keywords: manip
● Alias: computeAffxSFandSDT
● 0 images

computeOutlier (Package: sscore) : Compute outlier probes

Computes outlier and/or mask probes for a set of Affymetrix GeneChips that will be excluded from S-Score calculations

● Data Source: BioConductor
● Keywords: manip
● Alias: computeOutlier
● 0 images

computeRawQ (Package: sscore) : Computes RawQ

Computes the RawQ value of a single Affymetrix GeneChip

● Data Source: BioConductor
● Keywords: manip
● Alias: computeRawQ
● 0 images

computeSFandSDT (Package: sscore) : Compute SF and SDT values

Computes the scaling factor (SF) and statistical difference threshold (SDT) values of Affymetrix GeneChips, for use in calculating S-Score values

● Data Source: BioConductor
● Keywords: manip
● Alias: computeSFandSDT
● 0 images

computeZoneIInfo (Package: sscore) : Compute zone background and noise

Computes the background and noise for a given zone of a single Affymetrix GeneChip

● Data Source: BioConductor
● Keywords: manip
● Alias: computeZoneIInfo
● 0 images

computeZonenoise (Package: sscore) : Computes zone noise

Computes the noise (average standard error) of the probe intensities for a single Affymetrix GeneChip

● Data Source: BioConductor
● Keywords: manip
● Alias: computeZonenoise
● 0 images