R Graphical Manual

Last data update: 2014.03.03

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R Release (3.2.3)
CranContrib
BioConductor
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Classification

Results 1 - 10 of 18 found.
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getCountMatrix-methods (Package: ssviz) : getCountMatrix

returns the bam data.frame with an additional column counts. Only relevant if the fasta file used for mapping input was previously collapsed via fastx_toolkit to return a fasta read name in the format of readnumber-totalcounts

● Data Source: BioConductor
● Keywords:
● Alias: getCountMatrix,DataFrame-method, getCountMatrix-methods
● 0 images

getCountMatrix (Package: ssviz) :

● Data Source: BioConductor
● Keywords:
● Alias: getCountMatrix
● 0 images

logicalORmissing-class (Package: ssviz) : Class code{"logicalORmissing"

Class union of logical and missing object.

● Data Source: BioConductor
● Keywords: classes
● Alias: logicalORmissing-class
● 0 images

ntfreq-methods (Package: ssviz) : ntfreq

Calculates nucleotide frequency of reads in bam file

● Data Source: BioConductor
● Keywords: methods
● Alias: ntfreq,DataFrame,numeric-method, ntfreq-methods
● 0 images

ntfreq (Package: ssviz) :

Calculates nucleotide frequency of reads in bam file

● Data Source: BioConductor
● Keywords:
● Alias: ntfreq
● 0 images

pingpong-methods (Package: ssviz) : pingpong

piRNA ping-pong analysis of complementary sequences

● Data Source: BioConductor
● Keywords: methods
● Alias: pingpong,DataFrame-method, pingpong-methods
● 0 images

pingpong (Package: ssviz) :

piRNA ping-pong analysis of complementary sequences

● Data Source: BioConductor
● Keywords:
● Alias: pingpong
● 0 images

plotDistro-methods (Package: ssviz) : plotDistro

Plots distribution of reads in the bam file based on length, direction (strand) or location (rname)

● Data Source: BioConductor
● Keywords: methods
● Alias: plotDistro,list-method, plotDistro-methods
● 0 images

plotDistro (Package: ssviz) :

Plots distribution of reads in the bam file based on length, direction (strand) or location (rname)

● Data Source: BioConductor
● Keywords:
● Alias: plotDistro
● 1 images

plotFreq-methods (Package: ssviz) : plotFreq

Plots nucleotide frequency generated by ntfreq

● Data Source: BioConductor
● Keywords: methods
● Alias: plotFreq,data.frame,logicalORmissing-method, plotFreq-methods
● 0 images