R Graphical Manual

Last data update: 2014.03.03

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CranContrib
BioConductor
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Results 1 - 10 of 21 found.
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Pi (Package: staRank) : Get Pi

Accessor function to obtain the Pi matrix from RankSummary objects.

● Data Source: BioConductor
● Keywords:
● Alias: Pi, Pi,RankSummary-method
● 0 images

RankSummary-class (Package: staRank) : Class RankSummary

A class containing different rankings of a dataset further summary information like the stable set sizes, a correlation matrix of the rankings, the name of the base ranking method, the function call and if needed the Pi matrix of the stabilityRanking.

● Data Source: BioConductor
● Keywords: classes
● Alias: RankSummary, RankSummary-class
● 0 images

aggregRank (Package: staRank) : aggregRank

Performs rank aggregation on a chosen summary statistic that is applied on a matrix of (columnwise) rankings.

● Data Source: BioConductor
● Keywords:
● Alias: aggregRank
● 0 images

avrgRank (Package: staRank) : Get average ranking

Accessor function to obtain the average ranking from RankSummary objects.

● Data Source: BioConductor
● Keywords:
● Alias: avrgRank, avrgRank,RankSummary-method
● 0 images

baseRank (Package: staRank) : Get base ranking

Accessor function to obtain the base ranking from RankSummary objects.

● Data Source: BioConductor
● Keywords:
● Alias: baseRank, baseRank,RankSummary-method
● 0 images

dataFormatRSA (Package: staRank) : dataFormatRSA

Creates a data.frame in the RSA input format from a matrix, where rows indicate the genes and columns the replicate or siRNA values.

● Data Source: BioConductor
● Keywords:
● Alias: dataFormatRSA
● 0 images

getRankmatrix (Package: staRank) : getRankmatrix

Extracts all three rankings from a RankSummary object.

● Data Source: BioConductor
● Keywords:
● Alias: getRankmatrix
● 0 images

getSampleScores (Package: staRank) : Get Sample Scores

an S4 method to a sample dataset that is scored by a given method.

● Data Source: BioConductor
● Keywords:
● Alias: getSampleScores, getSampleScores,list-method, getSampleScores,matrix-method
● 0 images

getStability (Package: staRank) : getStability

Performes stability selection on sample rankings with a given stability threshold. Selection probabilities and stability ranking are calculated.

● Data Source: BioConductor
● Keywords:
● Alias: getStability
● 0 images

method (Package: staRank) : Get method

Accessor function to obtain the name of the base ranking method from RankSummary objects.

● Data Source: BioConductor
● Keywords:
● Alias: method, method,RankSummary-method
● 0 images