PMindex
(Package: tilingArray) :
Find the index of the exact match (PM) or background probes from a probeAnno environment
Find the index of the exact match (PM) or background probes from a probeAnno environment
● Data Source:
BioConductor
● Keywords: manip
● Alias: BGindex, PMindex
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0 images
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breakpointsPretend
(Package: tilingArray) :
Accessor methods for breakpointsPretend objects - not to be called
Accessor methods for breakpointsPretend objects - not to be called by the user.
● Data Source:
BioConductor
● Keywords: manip
● Alias: breakpoints.breakpointsPretend, residuals.breakpointsPretend
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0 images
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This class represents the result of a segmentation, usually a call to the function segment.
● Data Source:
BioConductor
● Keywords: classes
● Alias: segmentation-class
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1 images
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This function is used for Figure 5 in the David et al. (PNAS 2006) paper and in the Huber et al. methods paper.
● Data Source:
BioConductor
● Keywords: manip
● Alias: comparisonPlot
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0 images
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This function calculates the cost matrix for the segmentation model
● Data Source:
BioConductor
● Keywords: manip
● Alias: costMatrix
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0 images
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findSegments
(Package: tilingArray) :
Fit a piecewise constant curve to a sequence of numbers --
This function is only here for backward compatibility - please use segment.
● Data Source:
BioConductor
● Keywords: manip
● Alias: findSegments
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0 images
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gffSub
(Package: tilingArray) :
Example of a genomic feature object
Example of a genomic feature object
● Data Source:
BioConductor
● Keywords: data
● Alias: gffSub
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1 images
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Adjust the hybridization intensities from an oligonucleotide microarray for probe-specific response effect by using one or several reference hybridizations. If x contains more than one array, vsnMatrix from the vsn package is called for between array normalization.
● Data Source:
BioConductor
● Keywords: manip
● Alias: normalizeByReference
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0 images
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otherStrand
(Package: tilingArray) :
Return the name of the opposite strand
Return the name of the opposite strand
● Data Source:
BioConductor
● Keywords: manip
● Alias: otherStrand
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0 images
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plotAlongChrom
(Package: tilingArray) :
Plot signals and segmentation for a region of a chromosome
Plot signals and segmentation for a region of a chromosome
● Data Source:
BioConductor
● Keywords: hplot
● Alias: plotAlongChrom
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1 images
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providing 
.