mutate_.treedata
(Package: treeplyr) :
Function for mutating an object of class code{treedata
This function can be used to add new variables to a treedata object; see mutate.
● Data Source:
CranContrib
● Keywords:
● Alias: mutate.grouped_treedata, mutate.treedata, mutate_.grouped_treedata, mutate_.treedata
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select_.treedata
(Package: treeplyr) :
Function for selecting columns from an object of class code{treedata
This function can be used to select a subset of variables (columns) from a treedata object; see select.
● Data Source:
CranContrib
● Keywords:
● Alias: select.grouped_treedata, select.treedata, select_.grouped_treedata, select_.treedata
●
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filterMatrix
(Package: treeplyr) :
Filter a matrix, returning either all continuous or all discrete characters
Filter a matrix, returning either all continuous or all discrete characters
● Data Source:
CranContrib
● Keywords:
● Alias: filterMatrix
●
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forceNames
(Package: treeplyr) :
Force names for rows, columns, or both
Force names for rows, columns, or both
● Data Source:
CranContrib
● Keywords:
● Alias: forceNames
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treeply
(Package: treeplyr) :
Run a function on the phylogeny of a code{treedata
Applies a function to the phylogeny in a treedata object. If the order of tips are changed, or if tips are dropped, then the data are automatically reordered to match the tree.
● Data Source:
CranContrib
● Keywords:
● Alias: treeply, treeply.treedata
●
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tdapply
(Package: treeplyr) :
Apply a function over all treedata object columns and return a list of results, analogously to the
Apply a function over all treedata object columns and return a list of results, analogously to the normal apply function
● Data Source:
CranContrib
● Keywords:
● Alias: tdapply
●
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detectAllCharacters
(Package: treeplyr) :
Apply detectCharacterType over an entire matrix
Apply detectCharacterType over an entire matrix
● Data Source:
CranContrib
● Keywords:
● Alias: detectAllCharacters
●
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filter_.treedata
(Package: treeplyr) :
Function for filtering rows from an object of class code{treedata
This function can be used to select a subset of species (rows) from a treedata object; see filter.
● Data Source:
CranContrib
● Keywords:
● Alias: filter.grouped_treedata, filter.treedata, filter_.grouped_treedata, filter_.treedata
●
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detectCharacterType
(Package: treeplyr) :
Function to detect whether a character is continuous or discrete
Function to detect whether a character is continuous or discrete
● Data Source:
CranContrib
● Keywords:
● Alias: detectCharacterType
●
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make.treedata
(Package: treeplyr) :
Function for making an object of class code{treedata
This function generates an object of class treedata that ensures that the ordering of tip labels and data remain intact. The object can be manipulated using dplyr functions.
● Data Source:
CranContrib
● Keywords:
● Alias: make.treedata
●
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