R Graphical Manual

Last data update: 2014.03.03

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Results 1 - 10 of 35 found.
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colnames-methods (Package: wateRmelon) : Methods for Function code{colnames

Methods for function colnames in package wateRmelon.

● Data Source: BioConductor
● Keywords: methods, ~~ other possible keyword(s) ~~
● Alias: colnames,MethyLumiSet-method, colnames-methods
● 0 images

combo (Package: wateRmelon) : Combine MethyLumiSet objects

This is a wrapper for combining different MethyLumiSet objects.

● Data Source: BioConductor
● Keywords: ~kwd1, ~kwd2
● Alias: combo
● 0 images

dasen-methods (Package: wateRmelon) :

Multiple ways of calculating the index of methylation (beta) from methylated and unmethylated probe intensities used in Pidsley et al 2012.

● Data Source: BioConductor
● Keywords:
● Alias: betaqn,MethyLumiSet-method, danen,MethyLumiSet-method, danes,MethyLumiSet-method, danet,MethyLumiSet-method, dasen,MethyLumiSet-method, daten1,MethyLumiSet-method, daten2,MethyLumiSet-method, fuks,MethyLumiSet-method, nanes,MethyLumiSet-method, nanet,MethyLumiSet-method, nasen,MethyLumiSet-method, naten,MethyLumiSet-method, swan,MethyLumiSet-method, tost,MethyLumiSet-method
● 0 images

dasen-minfi-methods (Package: wateRmelon) :

Multiple ways of calculating the index of methylation (beta) from methylated and unmethylated probe intensities used in Pidsley et al 2012.

● Data Source: BioConductor
● Keywords:
● Alias: betaqn,MethylSet-method, betaqn,RGChannelSet-method, danen,MethylSet-method, danen,RGChannelSet-method, danes,MethylSet-method, danes,RGChannelSet-method, danet,MethylSet-method, danet,RGChannelSet-method, dasen,MethylSet-method, dasen,RGChannelSet-method, daten1,MethylSet-method, daten1,RGChannelSet-method, daten2,MethylSet-method, daten2,RGChannelSet-method, fuks,MethylSet-method, fuks,RGChannelSet-method, nanes,MethylSet-method, nanes,RGChannelSet-method, nanet,MethylSet-method, nanet,RGChannelSet-method, nasen,MethylSet-method, nasen,RGChannelSet-method, naten,MethylSet-method, naten,RGChannelSet-method, swan,MethylSet-method, swan,RGChannelSet-method, tost,MethylSet-method, tost,RGChannelSet-method
● 0 images

betaqn-exprmethy450-methods (Package: wateRmelon) :

Quantile normalize betas from exprmethy450 objects

● Data Source: BioConductor
● Keywords: ~kwd1, ~kwd2
● Alias: betaqn,exprmethy450-method, fuks,exprmethy450-method
● 0 images

dasen (Package: wateRmelon) :

Multiple ways of calculating the index of methylation (beta) from methylated and unmethylated probe intensities used in Pidsley et al 2012. S4 methods exist where possible for MethyLumiSet, MethylSet, RGSet and exprmethy450 objects.

● Data Source: BioConductor
● Keywords: ~kwd1, ~kwd2
● Alias: betaqn, danen, danes, danet, dasen, daten1, daten2, fuks, nanes, nanet, nasen, naten, swan, tost
● 0 images

db1 (Package: wateRmelon) :

db1 is used for quantile normalizing methylated together with unmethylated (dye bias methods nanet, nanes, danes and danet. dfs* functions are used for smoothing the background equalization in methods whose names start with d (daten etc).

● Data Source: BioConductor
● Keywords:
● Alias: db1, dfs2, dfsfit
● 0 images

dmrse-methods (Package: wateRmelon) : Methods for Function code{dmrse

Methods for function dmrse, dmrse_row and dmrse_col in package wateRmelon. Please see dmrse for details of the calculation of this standard-error performance metric.

● Data Source: BioConductor
● Keywords: methods, ~~ other possible keyword(s) ~~
● Alias: dmrse,MethyLumiSet-method, dmrse,MethylSet-method, dmrse,RGChannelSet-method, dmrse,exprmethy450-method, dmrse-methods, dmrse_col,MethyLumiSet-method, dmrse_col,MethylSet-method, dmrse_col,RGChannelSet-method, dmrse_col,exprmethy450-method, dmrse_col-methods, dmrse_row,MethyLumiSet-method, dmrse_row,MethylSet-method, dmrse_row,RGChannelSet-method, dmrse_row,exprmethy450-method, dmrse_row-methods
● 0 images

dmrse (Package: wateRmelon) :

Imprinting differentially methylated regions (iDMRs) are expected to be approximately half methylated, as is observed at the 227 probes in known iDMRs. These functions calculate measures of dispersion for the beta values at these CpG sites, of which the most useful is dmrse_row, which is the between-sample standard error.

● Data Source: BioConductor
● Keywords:
● Alias: dmrse, dmrse_col, dmrse_row
● 0 images

genki-methods (Package: wateRmelon) : Methods for Function code{genki

Methods for function genki in package wateRmelon. Please see genki for details of the calculation of this standard-error performance metric.

● Data Source: BioConductor
● Keywords: methods, ~~ other possible keyword(s) ~~
● Alias: genki,MethyLumiSet-method, genki,MethylSet-method, genki,RGChannelSet-method, genki,exprmethy450-method, genki-methods
● 0 images