Chain
(Package: zoon) :
Chain modules together
Chain combines multiple modules of the same module type such that they are executed sequentially and their outputs combined. For example, process modules may be Chained to carry out successive processing operations. By contrast, listing modules of the same type would split the workflow into multiple parallel workflows, each using a different module at this step. Similarly for occurrence or covariate modules the datasets are joined (row- or layer-wise) whereas list would carry out separate analyses. Model and output modules may not be chained. Developers should note that this function is not actually used - calls using Chain are parsed by workflow, with behaviour similar to this function.
● Data Source:
CranContrib
● Keywords:
● Alias: Chain
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FrescaloBias
(Package: zoon) :
Example bias raster for plants in England
This is an example bias raster giving a modelled estimate of the relative recording effort for plants in England using the Frescalo function in the R package sparta.
● Data Source:
CranContrib
● Keywords:
● Alias: FrescaloBias
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workflow
(Package: zoon) :
Run a full workflow.
This is the main function of zoon. The arguments should specify at least five modules, at least one of each type. If modules do not have any arguments to be specific (or defaults are being used then simply give the names of the module. If arguments are needed give the modules in the form of a function e.g. occurrence = AModule(para1 = 2, para2 = 'detail')
● Data Source:
CranContrib
● Keywords:
● Alias: workflow
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AplumbeusOcc
(Package: zoon) :
UK occurrence data for Anopheles plumbeus as taken from GBIF
This is an example occurrence only data for the species Anopheles plumbeus. The data are taken from GBIF and restricted to the UK. These data are used in the module UKAnophelesPlumbeus which makes for a quick running occurrence module for testing and playing with zoon.
● Data Source:
CranContrib
● Keywords:
● Alias: AplumbeusOcc
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UKAirRas
(Package: zoon) :
UK Air temperature raster layer.
This is an example environmental covariate raster layer. It is surface temperatures for the UK taken from NCEP
● Data Source:
CranContrib
● Keywords:
● Alias: UKAirRas
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ChangeWorkflow
(Package: zoon) :
Change a workflow and rerun.
Takes a workflow object and reruns it with changes.
● Data Source:
CranContrib
● Keywords:
● Alias: ChangeWorkflow
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zoon
(Package: zoon) :
Zoon: A package for comparing multple SDM models, good model diagnostics
Zoon: A package for comparing multple SDM models, good model diagnostics and better reproducibility
● Data Source:
CranContrib
● Keywords:
● Alias: zoon, zoon-package
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plot.zoonWorkflow
(Package: zoon) :
Plot a schematic illustration of a zoon workflow structure.
Opens a graphics device and produces a plot of the workflow structure and modules used.
● Data Source:
CranContrib
● Keywords:
● Alias: plot.zoonWorkflow
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GetPackage
(Package: zoon) :
Helper to install (if needed) and load a package
Given a package name, either as a string or object, load the package if it exists, else install it from CRAN and then load
● Data Source:
CranContrib
● Keywords:
● Alias: GetPackage
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print.zoonWorkflow
(Package: zoon) :
A function to print a zoonWorkflow object
The function returns a very simple output detailing the function call.
● Data Source:
CranContrib
● Keywords:
● Alias: print.zoonWorkflow
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