gtrellis

Package: gtrellis
Type: Package
Title: Genome Level Trellis Layout
Version: 1.4.2
Date: 2016-4-26
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Depends: R (>= 3.1.2), grid, IRanges, GenomicRanges
Imports: circlize (>= 0.3.3), GetoptLong
Suggests: testthat (>= 1.0.0), knitr, RColorBrewer, markdown,
ComplexHeatmap (>= 1.9.7)
VignetteBuilder: knitr
Description: Genome level Trellis graph visualizes genomic data conditioned by
genomic categories (e.g. chromosomes). For each genomic category, multiple
dimensional data which are represented as tracks describe different features
from different aspects. This package provides high flexibility to arrange
genomic categories and to add self-defined graphics in the plot.
biocViews: Software, Visualization, Sequencing
URL: https://github.com/jokergoo/gtrellis
License: GPL (>= 2)
Packaged: 2016-05-16 05:21:51 UTC; biocbuild
Repository: Bioconductor
Date/Publication: 2016-4-26 00:00:00
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'gtrellis' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'gtrellis'
    finding HTML links ... done
    add_heatmap_track                       html  
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_heatmap_track.rd:14: missing file link 'GRanges'
    add_ideogram_track                      html  
    add_lines_track                         html  
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_lines_track.rd:14: missing file link 'GRanges'
    add_points_track                        html  
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_points_track.rd:14: missing file link 'GRanges'
    add_rect_track                          html  
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_rect_track.rd:14: missing file link 'GRanges'
    add_segments_track                      html  
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/add_segments_track.rd:14: missing file link 'GRanges'
    add_track                               html  
    current_track                           html  
    get_cell_meta_data                      html  
    gtrellis_layout                         html  
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/gtrellis_layout.rd:44: missing file link 'I'
Rd warning: /tmp/RtmpFGdIf0/R.INSTALL33f6330a9a56/gtrellis/man/gtrellis_layout.rd:57: missing file link 'grob'
    gtrellis_show_index                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (gtrellis)
Making 'packages.html' ... done