ACME

Package: ACME
Version: 2.28.0
Date: 2011-06-15
Title: Algorithms for Calculating Microarray Enrichment (ACME)
Author: Sean Davis <sdavis2@mail.nih.gov>
Maintainer: Sean Davis <sdavis2@mail.nih.gov>
Depends: R (>= 2.10), Biobase (>= 2.5.5), methods, BiocGenerics
Imports: graphics, stats
Description: ACME (Algorithms for Calculating Microarray Enrichment) is
a set of tools for analysing tiling array ChIP/chip, DNAse
hypersensitivity, or other experiments that result in regions
of the genome showing "enrichment". It does not rely on a
specific array technology (although the array should be a
"tiling" array), is very general (can be applied in experiments
resulting in regions of enrichment), and is very insensitive to
array noise or normalization methods. It is also very fast and
can be applied on whole-genome tiling array experiments quite
easily with enough memory.
License: GPL (>= 2)
URL: http://watson.nci.nih.gov/~sdavis
biocViews: Technology, Microarray, Normalization
NeedsCompilation: yes
Packaged: 2016-05-04 02:59:33 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ACME' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c windowChisq.c -o windowChisq.o
windowChisq.c:86:20: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types]
     {"windowChisq",&windowChisq,5},
                    ^
windowChisq.c:86:20: note: (near initialization for 'callMethods[0].fun')
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ACME.so windowChisq.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ACME/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'ACME'
** help
*** installing help indices
  converting help for package 'ACME'
    finding HTML links ... done
    ACMECalcSet-class                       html  
    finding level-2 HTML links ... done

    ACMESet-class                           html  
    aGFF-class                              html  
    aGFFCalc-class                          html  
    do.aGFF.calc                            html  
    example.agff                            html  
    findClosestGene                         html  
    findRegions                             html  
    generics                                html  
    getRefflat                              html  
    read.resultsGFF                         html  
    write.bedGraph                          html  
    write.sgr                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ACME)
Making 'packages.html' ... done