ACNE

Package: ACNE
Version: 0.8.1
Depends: R (>= 3.0.0), aroma.affymetrix (>= 2.14.0)
Imports: MASS, R.methodsS3 (>= 1.7.0), R.oo (>= 1.19.0), R.utils (>=
2.1.0), matrixStats (>= 0.14.2), R.filesets (>= 2.9.0),
aroma.core (>= 2.14.0)
Suggests: DNAcopy
Date: 2015-10-26
Title: Affymetrix SNP Probe-Summarization using Non-Negative Matrix
Factorization
Authors@R: c(
person("Maria", "Ortiz", role=c("aut")),
person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"),
email="henrikb@braju.com"),
person("Angel", "Rubio", role=c("aut")))
Description: A summarization method to estimate allele-specific copy number signals for Affymetrix SNP microarrays using non-negative matrix factorization (NMF).
License: LGPL (>= 2.1)
URL: https://github.com/HenrikBengtsson/ACNE
BugReports: https://github.com/HenrikBengtsson/ACNE/issues
LazyLoad: TRUE
biocViews: aCGH, CopyNumberVariants, SNP, Microarray, OneChannel,
TwoChannel, Genetics
NeedsCompilation: no
Packaged: 2015-10-27 03:03:12 UTC; hb
Author: Maria Ortiz [aut],
Henrik Bengtsson [aut, cre, cph],
Angel Rubio [aut]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Repository: CRAN
Date/Publication: 2015-10-27 08:09:51

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ACNE' ...
** package 'ACNE' successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
The following object is masked _by_ package:aroma.affymetrix:

    writeCdf

The following object is masked from package:R.utils:

    findFiles

** help
*** installing help indices
  converting help for package 'ACNE'
    finding HTML links ... done
    ACNE-package                            html  
    NmfPlm                                  html  
    NmfSnpPlm                               html  
    Non-documented_objects                  html  
    WHInit                                  html  
    doACNE                                  html  
    finding level-2 HTML links ... done

    fitSnpNmf                               html  
    fitSnpNmfArray                          html  
    plot.SnpNmfFit                          html  
    pseudoinverse                           html  
    removeOutliers                          html  
    robustHInit                             html  
    robustWInit                             html  
    snpArrayToMatrix                        html  
** building package indices
** testing if installed package can be loaded
The following object is masked _by_ package:aroma.affymetrix:

    writeCdf

The following object is masked from package:R.utils:

    findFiles

* DONE (ACNE)
Making 'packages.html' ... done