ARTIVA

Package: ARTIVA
Type: Package
Title: Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme
VArying) Model
Version: 1.2.3
Date: 2015-05-19
Author: S. Lebre and G. Lelandais.
Maintainer: S. Lebre <sophie.lebre@icube.unistra.fr>
Depends: MASS, igraph, gplots
Description: Reversible Jump MCMC (RJ-MCMC)sampling for approximating the posterior
distribution of a time varying regulatory network, under the Auto Regressive TIme VArying
(ARTIVA) model (for a detailed description of the algorithm, see Lebre et al. BMC Systems
Biology, 2010). Starting from time-course gene expression measurements for a gene of
interest (referred to as "target gene") and a set of genes (referred to as "parent genes")
which may explain the expression of the target gene, the ARTIVA procedure identifies
temporal segments for which a set of interactions occur between the "parent genes" and the
"target gene". The time points that delimit the different temporal segments are referred to
as changepoints (CP).
License: GPL (>= 2)
LazyLoad: yes
LazyData: yes
Packaged: 2015-05-19 20:18:20 UTC; lebre
Repository: CRAN
NeedsCompilation: no
Date/Publication: 2015-05-20 01:09:27

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ARTIVA' ...
** package 'ARTIVA' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ARTIVA'
    finding HTML links ... done
    ARTIVA-internal                         html  
    ARTIVA-package                          html  
    ARTIVAnet                               html  
    ARTIVAsubnet                            html  
    ARTIVAsubnetAnalysis                    html  
    CP.postDist                             html  
    choosePriors                            html  
    drosophila                              html  
    geneNetworkSummary                      html  
    plotCP.postDist                         html  
    priors                                  html  
    simulatedProfiles                       html  
    traceGeneProfiles                       html  
    traceNetworks                           html  
    yeast                                   html  
** building package indices
** testing if installed package can be loaded
* DONE (ARTIVA)
Making 'packages.html' ... done