ARTP

Package: ARTP
Title: Gene and Pathway p-values computed using the Adaptive Rank
Truncated Product
Version: 2.0.4
Date: 2013-07-30
Author: Kai Yu, Qizhai Li and William Wheeler
Description: A package for calculating gene and pathway p-values using the Adaptive Rank Truncated Product test
Maintainer: Bill Wheeler <wheelerb@imsweb.com>
Depends:
License: GPL-2
Packaged: 2014-02-20 15:23:20 UTC; wheelerwi
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-02-20 18:51:03

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ARTP' ...
** package 'ARTP' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c code.c -o code.o
code.c: In function 'read_data':
code.c:1134:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, size, fpt);
   ^
code.c:1148:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, size, fpt);
     ^
code.c: In function 'read_header':
code.c:1072:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, sizeof(line), fpt);
   ^
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ARTP.so code.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ARTP/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'ARTP'
    finding HTML links ... done
    ARTP                                    html  
    ARTP_pathway                            html  
    gene.list                               html  
    gene_SNP_data                           html  
    geno_data                               html  
    obs_pvalues                             html  
    perm_pvalues                            html  
    pheno.list                              html  
    pheno_data                              html  
    plot_genes                              html  
    runPermutations                         html  
Rd warning: /tmp/RtmpG8WPl0/R.INSTALL62cb2f651b64/ARTP/man/runPermutations.Rd:29: missing file link 'glm.fit'
    single.marker.test                      html  
Rd warning: /tmp/RtmpG8WPl0/R.INSTALL62cb2f651b64/ARTP/man/single.marker.test.Rd:35: missing file link 'glm.fit'
    snp.list                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ARTP)
Making 'packages.html' ... done