AnnotationDbi

Package: AnnotationDbi
Title: Annotation Database Interface
Description: Provides user interface and database connection code
for annotation data packages using SQLite data storage.
Version: 1.34.3
Author: Herve Pages, Marc Carlson, Seth Falcon, Nianhua Li
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
Depends: R (>= 2.7.0), methods, utils, stats4, BiocGenerics (>=
0.15.10), Biobase (>= 1.17.0), IRanges
Imports: methods, utils, DBI, RSQLite, stats4, BiocGenerics, Biobase,
S4Vectors (>= 0.9.25), IRanges
Suggests: DBI (>= 0.2-4), RSQLite (>= 0.6-4), hgu95av2.db, GO.db,
org.Sc.sgd.db, org.At.tair.db, KEGG.db, RUnit,
TxDb.Hsapiens.UCSC.hg19.knownGene, hom.Hs.inp.db, org.Hs.eg.db,
reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75,
BiocStyle, knitr
Collate: 00RTobjs.R unlist2.R AllGenerics.R AllClasses.R FlatBimap.R
SQL.R AnnDbObj-lowAPI.R Bimap.R GOTerms.R BimapFormatting.R
Bimap-envirAPI.R flatten.R methods-AnnotationDb.R
methods-SQLiteConnection.R methods-geneCentricDbs.R
methods-geneCentricDbs-keys.R methods-ReactomeDb.R
methods-Inparanoid.R methods-Inparanoid8.R loadDb.R
createAnnObjs-utils.R createAnnObjs.NCBIORG_DBs.R
createAnnObjs.NCBICHIP_DBs.R createAnnObjs.ORGANISM_DB.R
createAnnObjs.YEASTCHIP_DB.R createAnnObjs.COELICOLOR_DB.R
createAnnObjs.ARABIDOPSISCHIP_DB.R createAnnObjs.MALARIA_DB.R
createAnnObjs.YEAST_DB.R createAnnObjs.YEASTNCBI_DB.R
createAnnObjs.ARABIDOPSIS_DB.R createAnnObjs.GO_DB.R
createAnnObjs.KEGG_DB.R createAnnObjs.INPARANOID_DB.R
createAnnObjs.PFAM_DB.R AnnDbPkg-templates-common.R
AnnDbPkg-checker.R print.probetable.R makeMap.R inpIDMapper.R
test_AnnotationDbi_package.R
License: Artistic-2.0
biocViews: Annotation, Microarray, Sequencing, GenomeAnnotation
VignetteBuilder: knitr
Packaged: 2016-05-22 01:45:39 UTC; biocbuild
Video: https://www.youtube.com/watch?v=8qvGNTVz3Ik
NeedsCompilation: no

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'AnnotationDbi' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'packageName' in package 'AnnotationDbi'
Creating a generic function for 'toString' from package 'base' in package 'AnnotationDbi'
Creating a generic function for 'ls' from package 'base' in package 'AnnotationDbi'
Creating a generic function for 'eapply' from package 'base' in package 'AnnotationDbi'
Creating a generic function for 'exists' from package 'base' in package 'AnnotationDbi'
Creating a generic function for 'sample' from package 'base' in package 'AnnotationDbi'
** help
*** installing help indices
  converting help for package 'AnnotationDbi'
    finding HTML links ... done
    AnnDbObj-class                          html  
    AnnDbPkg-checker                        html  
    AnnotationDb-class                      html  
    AnnotationDbi-internals                 html  
    Bimap-direction                         html  
    Bimap-envirAPI                          html  
    Bimap-keys                              html  
    Bimap-toTable                           html  
    Bimap                                   html  
    BimapFiltering                          html  
    BimapFormatting                         html  
    GOColsAndKeytypes                       html  
    GOFrame                                 html  
    GOTerms-class                           html  
    InparanoidColsAndKeytypes               html  
    KEGGFrame                               html  
    colsAndKeytypes                         html  
    createSimpleBimap                       html  
    inpIDMapper                             html  
    makeGOGraph                             html  
    make_eg_to_go_map                       html  
    print.probetable                        html  
    toSQLStringSet                          html  
    unlist2                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AnnotationDbi)
Making 'packages.html' ... done