AnnotationHub

Package: AnnotationHub
Type: Package
Title: Client to access AnnotationHub resources
Version: 2.4.2
Authors@R:
c(person("Martin", "Morgan", email="martin.morgan@roswellpark.org",
role="cre"),
person("Marc", "Carlson", role="ctb"),
person("Dan", "Tenenbaum", role="ctb"),
person("Sonali", "Arora", role="ctb"))
biocViews: Infrastructure, DataImport, GUI, ThirdPartyClient
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Description: This package provides a client for the Bioconductor
AnnotationHub web resource. The AnnotationHub web resource
provides a central location where genomic files (e.g., VCF, bed,
wig) and other resources from standard locations (e.g., UCSC,
Ensembl) can be discovered. The resource includes metadata about
each resource, e.g., a textual description, tags, and date of
modification. The client creates and manages a local cache of
files retrieved by the user, helping with quick and reproducible
access.
License: Artistic-2.0
Depends: BiocGenerics (>= 0.15.10)
Imports: utils, methods, grDevices, RSQLite, BiocInstaller,
AnnotationDbi (>= 1.31.19), S4Vectors, interactiveDisplayBase,
httr
Suggests: IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
Biostrings, SummarizedExperiment
Enhances: AnnotationHubData
Collate: AnnotationHubOption.R AllGenerics.R Hub-class.R db-utils.R
AnnotationHub-class.R AnnotationHubResource-class.R
AnnotationHubBEDResource-class.R
AnnotationHubProteomicsResource-class.R
AnnotationHubEpigenomeResource-class.R utilities.R sql-utils.R
hub-utils.R cache-utils.R zzz.R
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-05-16 03:51:57 UTC; biocbuild
Author: Martin Morgan [cre],
Marc Carlson [ctb],
Dan Tenenbaum [ctb],
Sonali Arora [ctb]

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'AnnotationHub' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'AnnotationHub'
    finding HTML links ... done
    AnnotationHub-class                     html  
    AnnotationHub-package                   html  
    AnnotationHubResource-class             html  
    getAnnotationHubOption                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AnnotationHub)
Making 'packages.html' ... done