BAS

Package: BAS
Version: 1.2.1
Date: 2016-04-11
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Authors@R: c(person("Merlise", "Clyde", email="clyde@stat.duke.edu",
role=c("aut","cre", "cph")),
person("Michael", "Littman", role="ctb"),
person("Quanli", "Wang", role="ctb"),
person("Joyee", "Ghosh", role="ctb"),
person("Yingbo", "Li", role="ctb"))
Depends: R (>= 3.0), stats, graphics
Suggests: MASS
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from
Liang et al (2008)
<http://dx.doi.org/10.1198/016214507000001337>
for linear models or mixtures of
g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913 >. Other model
selection criteria include AIC and BIC. Sampling
probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an MCMC algorithm
samples models using the BAS tree structure as an efficient
hash table. Allows uniform or beta-binomial prior distributions on
models and for large p truncated priors on the model
space. The user may force variables to always be included.
License: GPL (>= 3)
URL: http://www.r-project.org
Repository: CRAN
NeedsCompilation: yes
Packaged: 2016-04-14 20:06:55 UTC; mclyde
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Date/Publication: 2016-04-16 04:27:26

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'BAS' ...
** package 'BAS' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c CHg_postzbeta.c -o CHg_postzbeta.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c E.ZS.c -o E.ZS.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c ZS.approx.full.np.c -o ZS.approx.full.np.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c ZS.approx.null.np.c -o ZS.approx.null.np.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c amcmc.c -o amcmc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c bayesglm.c -o bayesglm.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c bayesreg.c -o bayesreg.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c betapriorfamily.c -o betapriorfamily.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c cch.c -o cch.o
f95   -fpic  -g -O2  -c ch2inv.f -o ch2inv.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c const.c -o const.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c deterministic.c -o deterministic.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c family.c -o family.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c gamma.c -o gamma.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c glm_deterministic.c -o glm_deterministic.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c glm_fit.c -o glm_fit.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c glm_lpy.c -o glm_lpy.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c glm_mcmc.c -o glm_mcmc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c glm_mcmcbas.c -o glm_mcmcbas.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c glm_sampleworep.c -o glm_sampleworep.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c hg.approx.null.np.c -o hg.approx.null.np.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c hyp2f1.c -o hyp2f1.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c hyperg.c -o hyperg.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c hypergeoF.c -o hypergeoF.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c hypergeometric1F1.c -o hypergeometric1F1.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c igam.c -o igam.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c incompleteGamma.c -o incompleteGamma.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c isnan.c -o isnan.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c mcmc.c -o mcmc.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c mcmc_new.c -o mcmc_new.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c mcmcbas.c -o mcmcbas.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c mem.c -o mem.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c mtherr.c -o mtherr.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c polevl.c -o polevl.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c posisearch.c -o posisearch.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c powi.c -o powi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c probabilities.c -o probabilities.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c psi.c -o psi.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c r_multi_norm.c -o r_multi_norm.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c r_trunc_gamma.c -o r_trunc_gamma.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c robust_postbeta.c -o robust_postbeta.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c round.c -o round.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c sampleworep.c -o sampleworep.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c sampleworep_new.c -o sampleworep_new.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -g  -fpic  -g -O2  -c tree-structures.c -o tree-structures.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o BAS.so CHg_postzbeta.o E.ZS.o ZS.approx.full.np.o ZS.approx.null.np.o amcmc.o bayesglm.o bayesreg.o betapriorfamily.o cch.o ch2inv.o const.o deterministic.o family.o gamma.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg.approx.null.np.o hyp2f1.o hyperg.o hypergeoF.o hypergeometric1F1.o igam.o incompleteGamma.o isnan.o mcmc.o mcmc_new.o mcmcbas.o mem.o mtherr.o polevl.o posisearch.o powi.o probabilities.o psi.o r_multi_norm.o r_trunc_gamma.o robust_postbeta.o round.o sampleworep.o sampleworep_new.o tree-structures.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/BAS/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'BAS'
    finding HTML links ... done
    BAS-package                             html  
    Bernoulli                               html  
    EB                                      html  
    EB.global                               html  
    TG-priors                               html  
    Uniform                                 html  
    as.matrix                               html  
    bas                                     html  
    bas.glm                                 html  
    bayesglm                                html  
    beta.binomial                           html  
    beta.prime                              html  
    bin2int                                 html  
    cchpriors                               html  
    coefficients.bma                        html  
    coefpriors                              html  
    cv.summary.bma                          html  
    eplogprob-marg                          html  
    eplogprob                               html  
    fitted.bma                              html  
    gprior                                  html  
    hald                                    html  
    hyper-g-n                               html  
    hyper-g                                 html  
    hyper2d                                 html  
    hypergeometric                          html  
    hypergeometric1F1                       html  
    image.bma                               html  
    intrinsic                               html  
    jeffreys                                html  
    plot.bma                                html  
    plot.coefficients                       html  
    predict.basglm                          html  
    predict.bma                             html  
    protein                                 html  
    robust                                  html  
    summary.bma                             html  
    tcchpriors                              html  
    trunc.beta.binomial                     html  
    trunc.poisson                           html  
    update.bma                              html  
** building package indices
** testing if installed package can be loaded
* DONE (BAS)
Making 'packages.html' ... done