BDgraph

Package: BDgraph
Type: Package
Title: Bayesian Graph Selection Based on Birth-Death MCMC Approach
Version: 2.27
Date: 2016-04-20
Author: Abdolreza Mohammadi and Ernst Wit
Depends: R (>= 3.0.0), Matrix, igraph
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models with both continuous and discrete variables.
Acknowledgements: The help of the CRAN team to integrate C++ code with
R is gratefully acknowledged.
License: GPL (>= 3)
LazyLoad: yes
URL: https://www.tilburguniversity.edu/webwijs/show/a.mohammadi.htm
Packaged: 2016-04-22 11:40:32 UTC; p262842
Repository: CRAN
Date/Publication: 2016-04-22 14:44:16
NeedsCompilation: yes

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'BDgraph' ...
** package 'BDgraph' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Ig.cpp -o Ig.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c copula.cpp -o copula.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gcgm_DMH_bd.cpp -o gcgm_DMH_bd.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gcgm_DMH_bd_multi_update.cpp -o gcgm_DMH_bd_multi_update.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gcgm_DMH_rj.cpp -o gcgm_DMH_rj.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gcgm_bd.cpp -o gcgm_bd.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gcgm_bd_multi_update.cpp -o gcgm_bd_multi_update.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c gcgm_rj.cpp -o gcgm_rj.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ggm_DMH_bd.cpp -o ggm_DMH_bd.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ggm_DMH_bd_multi_update.cpp -o ggm_DMH_bd_multi_update.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ggm_DMH_rj.cpp -o ggm_DMH_rj.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ggm_bd.cpp -o ggm_bd.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ggm_bd_multi_update.cpp -o ggm_bd_multi_update.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ggm_rj.cpp -o ggm_rj.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c matrix.cpp -o matrix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c rgwish.cpp -o rgwish.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c scaleFree.cpp -o scaleFree.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o BDgraph.so Ig.o copula.o gcgm_DMH_bd.o gcgm_DMH_bd_multi_update.o gcgm_DMH_rj.o gcgm_bd.o gcgm_bd_multi_update.o gcgm_rj.o ggm_DMH_bd.o ggm_DMH_bd_multi_update.o ggm_DMH_rj.o ggm_bd.o ggm_bd_multi_update.o ggm_rj.o matrix.o rgwish.o scaleFree.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/BDgraph/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'BDgraph'
    finding HTML links ... done
    BDgraph-internal                        html  
    BDgraph-package                         html  
    bdgraph                                 html  
    bdgraph.npn                             html  
    bdgraph.sim                             html  
    compare                                 html  
    geneExpression                          html  
    gnorm                                   html  
    pgraph                                  html  
    plinks                                  html  
    plot.bdgraph                            html  
    plot.sim                                html  
    plotcoda                                html  
    plotroc                                 html  
    print.bdgraph                           html  
    print.sim                               html  
    rgwish                                  html  
    rwish                                   html  
    select                                  html  
    summary.bdgraph                         html  
    surveyData                              html  
    traceplot                               html  
** building package indices
** testing if installed package can be loaded
* DONE (BDgraph)
Making 'packages.html' ... done