BSgenome.Amellifera.UCSC.apiMel2.masked

Package: BSgenome.Amellifera.UCSC.apiMel2.masked
Title: Full masked genome sequences for Apis mellifera (UCSC version
apiMel2)
Description: Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Amellifera.UCSC.apiMel2, except that each of them has the 3 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), and (3) the mask of repeats from RepeatMasker (RM mask). Only the AGAPS and AMB masks are "active" by default.
Version: 1.3.99
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer
<maintainer@bioconductor.org>
Depends: BSgenome (>= 1.31.8), BSgenome.Amellifera.UCSC.apiMel2
Imports: BSgenome, BSgenome.Amellifera.UCSC.apiMel2
License: Artistic-2.0
organism: Apis mellifera
species: Honey Bee
provider: UCSC
provider_version: apiMel2
release_date: Jan. 2005
release_name: Baylor College of Medicine HGSC v.Amel_2.0
source_url: http://hgdownload.cse.ucsc.edu/goldenPath/apiMel2/bigZips/
biocViews: AnnotationData, Genetics, BSgenome, Apis_mellifera
Packaged: 2014-01-08 20:13:38 UTC; hpages

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'BSgenome.Amellifera.UCSC.apiMel2.masked' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'BSgenome.Amellifera.UCSC.apiMel2.masked'
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Rd warning: /tmp/RtmpRkQotM/R.INSTALL71f851a12ceb/BSgenome.Amellifera.UCSC.apiMel2.masked/man/package.Rd:26: missing file link 'BSgenome.Amellifera.UCSC.apiMel2'
Rd warning: /tmp/RtmpRkQotM/R.INSTALL71f851a12ceb/BSgenome.Amellifera.UCSC.apiMel2.masked/man/package.Rd:39: missing file link 'BSgenome.Amellifera.UCSC.apiMel2'
Rd warning: /tmp/RtmpRkQotM/R.INSTALL71f851a12ceb/BSgenome.Amellifera.UCSC.apiMel2.masked/man/package.Rd:41: missing file link 'BSgenome'
Rd warning: /tmp/RtmpRkQotM/R.INSTALL71f851a12ceb/BSgenome.Amellifera.UCSC.apiMel2.masked/man/package.Rd:44: missing file link 'MaskedDNAString'
** building package indices
** testing if installed package can be loaded
* DONE (BSgenome.Amellifera.UCSC.apiMel2.masked)
Making 'packages.html' ... done