Basic4Cseq

Package: Basic4Cseq
Type: Package
Title: Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
Version: 1.8.0
Date: 2015-08-24
Author: Carolin Walter
Maintainer: Carolin Walter <carolin.walter@uni-muenster.de>
Imports: methods, RCircos, BSgenome.Ecoli.NCBI.20080805
Depends: R (>= 3.0.0), Biostrings, GenomicAlignments, caTools,
GenomicRanges
Suggests: BSgenome.Hsapiens.UCSC.hg19
Description: Basic4Cseq is an R/Bioconductor package for basic
filtering, analysis and subsequent visualization of 4C-seq
data. Virtual fragment libraries can be created for any
BSGenome package, and filter functions for both reads and
fragments and basic quality controls are included. Fragment
data in the vicinity of the experiment's viewpoint can be
visualized as a coverage plot based on a running median
approach and a multi-scale contact profile.
License: LGPL-3
biocViews: Visualization, QualityControl
NeedsCompilation: no
Packaged: 2016-05-04 05:21:03 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Basic4Cseq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Basic4Cseq'
    finding HTML links ... done
    Data4Cseq-class                         html  
    Data4Cseq                               html  
    checkRestrictionEnzymeSequence          html  
    chooseNearCisFragments                  html  
    createVirtualFragmentLibrary            html  
    drawDigestionFragmentHistogram          html  
    drawHeatmap                             html  
    exportVisualizationFragmentData         html  
    getReadDistribution                     html  
    giveEnzymeSequence                      html  
    importVisualizationFragmentData         html  
    liverData                               html  
    liverDataRaw                            html  
    normalizeFragmentData                   html  
    plotTransInteractions                   html  
    prepare4CseqData                        html  
    printBEDFragmentLibrary                 html  
    printWigFile                            html  
    readPointsOfInterestFile                html  
    readsToFragments                        html  
    simulateDigestion                       html  
    visualizeViewpoint                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Basic4Cseq)
Making 'packages.html' ... done