CNTools

Package: CNTools
Version: 1.28.0
Title: Convert segment data into a region by sample matrix to allow for
other high level computational analyses.
Author: Jianhua Zhang
Maintainer: J. Zhang <jzhang@jimmy.harvard.edu>
Depends: R (>= 2.10), methods, tools, stats, genefilter
Description: This package provides tools to convert the output of
segmentation analysis using DNAcopy to a matrix structure with
overlapping segments as rows and samples as columns so that
other computational analyses can be applied to segmented data
Keyword: copy number
License: LGPL
ZipData: no
biocViews: Microarray, CopyNumberVariation
NeedsCompilation: yes
Packaged: 2016-05-04 03:13:58 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CNTools' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c getratios.c -o getratios.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o CNTools.so getratios.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/CNTools/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'start' in package 'CNTools'
Creating a new generic function for 'end' in package 'CNTools'
Creating a generic function for 'genefilter' from package 'genefilter' in package 'CNTools'
** help
*** installing help indices
  converting help for package 'CNTools'
    finding HTML links ... done
    CNSeg-class                             html  
    RS-class                                html  
    cor-methods                             html  
    diffBy-methods                          html  
    dist-methods                            html  
    genefilter-methods                      html  
    getRS-methods                           html  
    madFilter-methods                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNTools)
Making 'packages.html' ... done