CePa

Package: CePa
Type: Package
Title: Centrality-based pathway enrichment
Version: 0.5
Date: 2012-09-5
Author: Zuguang Gu
Maintainer: Zuguang Gu <jokergoo@gmail.com>
Depends: R (>= 2.10.0), igraph (>= 0.6), stats, snow
Description: Use pathway topology information to assign weight to
pathway nodes.
LazyLoad: yes
URL: http://mcube.nju.edu.cn/jokergoo/
License: GPL (>= 2)
Packaged: 2012-09-11 07:48:32 UTC; Administrator
Repository: CRAN
Date/Publication: 2012-09-11 08:35:47

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CePa' ...
** package 'CePa' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CePa'
    finding HTML links ... done
    CePa-package                            html  
    PID.db                                  html  
    cepa                                    html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/cepa.Rd:18: missing file link 'igraph'
    cepa.all                                html  
    cepa.all.parallel                       html  
    cepa.ora                                html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/cepa.ora.Rd:16: missing file link 'igraph'
    cepa.ora.all                            html  
    cepa.univariate                         html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/cepa.univariate.Rd:18: missing file link 'igraph'
    cepa.univariate.all                     html  
    gene.list                               html  
    generate.pathway                        html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/generate.pathway.Rd:15: missing file link 'graph.edgelist'
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/generate.pathway.Rd:22: missing file link 'graph.edgelist'
    get.cepa                                html  
    p.table                                 html  
    pathway.nodes                           html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/pathway.nodes.Rd:11: missing file link 'igraph'
    plot.cepa                               html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/plot.cepa.Rd:22: missing file link 'igraph'
    plot.cepa.all                           html  
    plot.pathway.catalogue                  html  
    plotGraph                               html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/plotGraph.Rd:18: missing file link 'layout'
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/plotGraph.Rd:28: missing file link 'igraph'
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/plotGraph.Rd:36: missing file link 'igraph'
    plotNull                                html  
    print.cepa                              html  
    print.cepa.all                          html  
    print.pathway.catalogue                 html  
    radiality                               html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/radiality.Rd:11: missing file link 'igraph'
    reach                                   html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/reach.Rd:11: missing file link 'igraph'
    read.cls                                html  
    read.gct                                html  
    report                                  html  
    sampleLabel                             html  
    set.pathway.catalogue                   html  
    spread                                  html  
Rd warning: /tmp/RtmpEuaxZ1/R.INSTALL7803463c066/CePa/man/spread.Rd:12: missing file link 'igraph'
** building package indices
** installing vignettes
   'CePa.Rnw' 
   'analysis-p53.Rnw' 
   'parsing-PID-pathway-data.Rnw' 
** testing if installed package can be loaded
* DONE (CePa)
Making 'packages.html' ... done