CluMix

Package: CluMix
Type: Package
Title: Clustering and Visualization of Mixed-Type Data
Version: 1.1
Date: 2016-05-23
Author: M. Hummel, A. Kopp-Schneider
Maintainer: Manuela Hummel <m.hummel@dkfz.de>
Description: Provides utilities for clustering subjects and variables of mixed data types. Similarities between subjects are measured by Gower's general similarity coefficient with an extension of Podani for ordinal variables. Similarities between variables are assessed by combination of appropriate measures of association for different pairs of data types. Alternatively, variables can also be clustered by the 'ClustOfVar' approach. The main feature of the package is the generation of a mixed-data heatmap. For visualizing similarities between either subjects or variables, a heatmap of the corresponding distance matrix can be drawn. Associations between variables can be explored by a 'confounderPlot', which allows visual detection of possible confounding, collinear, or surrogate factors for some variables of primary interest. Distance matrices and dendrograms for subjects and variables can be derived and used for further visualizations and applications.
License: GPL (>= 2)
Depends:
Imports: ClustOfVar, Hmisc, DescTools, extracat, marray, FD, gplots,
Matrix, Biobase
Suggests:
NeedsCompilation: no
Packaged: 2016-06-02 09:15:26 UTC; hummelma
Repository: CRAN
Date/Publication: 2016-06-03 18:47:22

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CluMix' ...
** package 'CluMix' successfully unpacked and MD5 sums checked
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CluMix'
    finding HTML links ... done
    CluMix-package                          html  
Rd warning: C:/Users/hummelma/AppData/Local/Temp/RtmpETuDxv/Rbuild18bc3ba4483/CluMix/man/CluMix-package.Rd:34: missing file link 'ClustOfVar'
    association                             html  
    confounderPlot                          html  
    dendro.subjects                         html  
    dendro.variables                        html  
    finding level-2 HTML links ... done

    dist.subjects                           html  
    dist.variables                          html  
    distmap                                 html  
    mix.heatmap                             html  
    mixdata                                 html  
    similarity.subjects                     html  
    similarity.variables                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CluMix)
Making 'packages.html' ... done