CoverageView

Package: CoverageView
Type: Package
Title: Coverage visualization package for R
Version: 1.8.0
Date: 2016-01-17
Author: Ernesto Lowy
Maintainer: Ernesto Lowy <ernestolowy@gmail.com>
Description: This package provides a framework for the visualization of
genome coverage profiles. It can be used for ChIP-seq
experiments, but it can be also used for genome-wide nucleosome
positioning experiments or other experiment types where it is
important to have a framework in order to inspect how the
coverage distributed across the genome
biocViews: Visualization,RNASeq,ChIPSeq,Sequencing,Technology,Software
License: Artistic-2.0
Depends: R (>= 2.10), methods, Rsamtools (>= 1.19.17), rtracklayer
Imports: S4Vectors (>= 0.7.21), IRanges (>= 2.3.23), GenomicRanges,
GenomicAlignments, parallel, tools
NeedsCompilation: no
Packaged: 2016-05-04 05:24:39 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CoverageView' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CoverageView'
    finding HTML links ... done
    CoverageBamFile-class                   html  
    finding level-2 HTML links ... done

    CoverageBigWigFile-class                html  
    CoverageView-internal                   html  
    CoverageView-package                    html  
    DF_H3K36me3                             html  
    DF_H3K36me3_control                     html  
    DF_H3K4me3                              html  
    DF_H3K4me3_ctl                          html  
    DF_H3K4me3_nopeaks_ratios               html  
    FoxA1_chr19                             html  
    cov.interval                            html  
    cov.matrix                              html  
    draw.heatmap                            html  
    draw.profile                            html  
    export.wig                              html  
    genome.covplot.cumdepth                 html  
    genome.covplot.depth                    html  
    write.profile                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CoverageView)
Making 'packages.html' ... done