CrypticIBDcheck

Package: CrypticIBDcheck
Type: Package
Title: Identifying cryptic relatedness in genetic association studies
Version: 0.3-1
Date: 2012-04-14
Author: Annick Joelle Nembot-Simo, Jinko Graham and Brad McNeney
Maintainer: Brad McNeney <mcneney@sfu.ca>
Depends: R (>= 2.14.0), rJPSGCS (>= 0.2-5), car (>= 2.0-9), ellipse (>=
0.3-5)
Imports: chopsticks
Suggests: parallel
Description: Exploratory tools to identify closely related subjects using autosomal genetic marker data.
License: GPL-3
LazyData: yes
Packaged: 2013-09-20 21:38:23 UTC; mcneney
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-09-21 08:05:29

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'CrypticIBDcheck' ...
** package 'CrypticIBDcheck' successfully unpacked and MD5 sums checked
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c IBDest.sim.c -o IBDest.sim.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c IBDest.study.c -o IBDest.study.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c IBDestp.c -o IBDestp.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c countIBS.c -o countIBS.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o CrypticIBDcheck.so IBDest.sim.o IBDest.study.o IBDestp.o countIBS.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/CrypticIBDcheck/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'CrypticIBDcheck'
    finding HTML links ... done
    CrypticIBDcheck-package                 html  
    IBD                                     html  
    IBDcheck                                html  
    finding level-2 HTML links ... done

    Nhlsim                                  html  
    RutgersMapB36                           html  
    SNPgenmap                               html  
    countIBS                                html  
    filter.control                          html  
    new.IBD                                 html  
    plot.IBD                                html  
    sim.control                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CrypticIBDcheck)
Making 'packages.html' ... done