DDD

Package: DDD
Type: Package
Title: Diversity-Dependent Diversification
Version: 3.2
Date: 2016-2-5
Depends: R (>= 3.0.2), deSolve, ape, ade4
Imports: phytools, subplex, Matrix, expoRkit, SparseM
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
License: GPL-3
Description:
Implements maximum likelihood methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, <DOI:10.1098/rspb.2011.1439>.
Also implements maximum likelihood methods to detect various types of key innovations in the light of diversity-dependence.
See Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, <DOI:10.1086/667574>.
Finally, DDD contains a function to simulate the diversity-dependent process.
NeedsCompilation: no
Packaged: 2016-02-09 08:59:36 UTC; rampa
Repository: CRAN
Date/Publication: 2016-02-09 10:24:37

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DDD' ...
** package 'DDD' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DDD'
    finding HTML links ... done
    DDD-internal                            html  
    DDD-package                             html  
    bd_ML                                   html  
    bd_loglik                               html  
    dd_KI_ML                                html  
    dd_KI_loglik                            html  
    dd_KI_sim                               html  
    dd_LR                                   html  
    dd_ML                                   html  
    dd_MS_ML                                html  
    dd_MS_loglik                            html  
    dd_MS_sim                               html  
    dd_SR_ML                                html  
    dd_SR_loglik                            html  
    dd_loglik                               html  
    dd_sim                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (DDD)
Making 'packages.html' ... done