DEDS

Package: DEDS
Title: Differential Expression via Distance Summary for Microarray Data
Date: 2007-09-24
Version: 1.46.0
Author: Yuanyuan Xiao <yxiao@itsa.ucsf.edu>, Jean Yee Hwa Yang
<jeany@maths.usyd.edu.au>.
Description: This library contains functions that calculate various
statistics of differential expression for microarray data,
including t statistics, fold change, F statistics, SAM,
moderated t and F statistics and B statistics. It also
implements a new methodology called DEDS (Differential
Expression via Distance Summary), which selects differentially
expressed genes by integrating and summarizing a set of
statistics using a weighted distance approach.
Maintainer: Yuanyuan Xiao <yxiao@itsa.ucsf.edu>
Depends: R (>= 1.7.0)
License: LGPL
biocViews: Microarray, DifferentialExpression
NeedsCompilation: yes
Packaged: 2016-05-04 02:43:11 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DEDS' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c deds.c -o deds.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c distance.c -o distance.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c input.c -o input.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c manip.c -o manip.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c random.c -o random.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c sampling.c -o sampling.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c stat_fun.c -o stat_fun.o
gcc -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o DEDS.so deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/DEDS/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DEDS'
    finding HTML links ... done
    ApoA1                                   html  
    DEDS-internal                           html  
    affySpikeIn                             html  
    aggregateFun                            html  
    comp.B                                  html  
    comp.F                                  html  
    comp.FC                                 html  
    comp.SAM                                html  
    comp.adjp                               html  
    comp.ebayes                             html  
    comp.fdr                                html  
    comp.modF                               html  
    comp.modt                               html  
    comp.stat                               html  
    comp.t                                  html  
    comp.unadjp                             html  
    deds.chooseTest                         html  
    deds.class                              html  
    deds.genExtra                           html  
    deds.pval                               html  
    deds.stat                               html  
    deds.stat.linkC                         html  
    hist.DEDS                               html  
    pairs.DEDS                              html  
    qqnorm.DEDS                             html  
    topgenes                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DEDS)
Making 'packages.html' ... done