DLMtool

Package: DLMtool
Type: Package
Title: Data-Limited Methods Toolkit
Version: 3.2
Date: 2016-06-08
Author: Tom Carruthers and Adrian Hordyk
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Description: Simulation testing and implementation of data-limited fishery stock
assessment methods.
License: GPL-2
Depends: R (>= 2.10.0), methods, snowfall, boot, MASS, parallel
LazyData: yes
LazyLoad: yes
VignetteBuilder: knitr
Suggests: knitr, rmarkdown
NeedsCompilation: no
Packaged: 2016-06-08 11:20:15 UTC; Adrian
Imports: Rcpp, abind, readxl
LinkingTo: Rcpp
Repository: CRAN
Date/Publication: 2016-06-09 05:49:14

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DLMtool' ...
** package 'DLMtool' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c bhnoneq_Rcpp.cpp -o bhnoneq_Rcpp.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o DLMtool.so RcppExports.o bhnoneq_Rcpp.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/DLMtool/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'DLMtool'
Creating a generic function for 'summary' from package 'base' in package 'DLMtool'
** help
*** installing help indices
  converting help for package 'DLMtool'
    finding HTML links ... done
    AvC                                     html  
    BK                                      html  
    BK_CC                                   html  
    BK_ML                                   html  
    CC1                                     html  
    CC4                                     html  
    CSRA                                    html  
    CSRAfunc                                html  
    Can                                     html  
    Cant                                    html  
    CheckConverg                            html  
    ChooseEffort                            html  
    ChooseSelect                            html  
    CompSRA                                 html  
    CompSRA4010                             html  
    DAAC                                    html  
    DBSRA                                   html  
    DBSRA4010                               html  
    DBSRA_40                                html  
    DBSRA_ML                                html  
    DCAC                                    html  
    DCAC4010                                html  
    DCAC_40                                 html  
    DCAC_ML                                 html  
    DD                                      html  
    DD4010                                  html  
    DDe                                     html  
    DDe75                                   html  
    DDes                                    html  
    DLMDataDir                              html  
    DLM_data-class                          html  
    DLM_fease-class                         html  
    DLM_general-class                       html  
    DLMdat                                  html  
    DLMtool-package                         html  
    DOM                                     html  
    DTe40                                   html  
    DTe50                                   html  
    DepF                                    html  
    DoOpt                                   html  
    DynF                                    html  
    FMSYref                                 html  
    FMSYref50                               html  
    FMSYref75                               html  
    Fadapt                                  html  
    Fdem                                    html  
    Fdem_CC                                 html  
    Fdem_ML                                 html  
    Fease                                   html  
    Fease_xl                                html  
    Fleet-class                             html  
    Fratio                                  html  
    Fratio4010                              html  
    Fratio_CC                               html  
    Fratio_ML                               html  
    GB_CC                                   html  
    GB_slope                                html  
    GB_target                               html  
    Gcontrol                                html  
    HDAAC                                   html  
    IT10                                    html  
    IT5                                     html  
    ITM                                     html  
    ITe10                                   html  
    ITe5                                    html  
    Input                                   html  
    Islope1                                 html  
    Islope4                                 html  
    Itarget1                                html  
    Itarget4                                html  
    ItargetE1                               html  
    ItargetE4                               html  
    KalmanFilter                            html  
    Kplot                                   html  
    L2A                                     html  
    LBSPR                                   html  
    LBSPRSim                                html  
    LBSPR_ItEff                             html  
    LBSPR_ItSel                             html  
    LBSPR_ItTAC                             html  
    LstepCC1                                html  
    LstepCC4                                html  
    LstepCE1                                html  
    LstepCE2                                html  
    Ltarget1                                html  
    Ltarget4                                html  
    LtargetE1                               html  
    LtargetE4                               html  
    MCD                                     html  
    MCD4010                                 html  
    ML2D                                    html  
    MRnoreal                                html  
    MRreal                                  html  
    MSE-class                               html  
    NAor0                                   html  
    NFref                                   html  
    NOAA_plot                               html  
    Needed                                  html  
    OM-class                                html  
    OM_xl                                   html  
    Observation-class                       html  
    OptFun                                  html  
    PorgMSE                                 html  
    Pplot                                   html  
    Rcontrol                                html  
    Rcontrol2                               html  
    Required                                html  
    SBT1                                    html  
    SBT2                                    html  
    SPMSY                                   html  
    SPSRA                                   html  
    SPSRA_ML                                html  
    SPmod                                   html  
    SPslope                                 html  
    Sam                                     html  
    Sense                                   html  
    SetRecruitCycle                         html  
    SnapMSE                                 html  
    Stock-class                             html  
    Sub                                     html  
    TAC                                     html  
    Tplot                                   html  
    Tplot2                                  html  
    TradePlot                               html  
    VOI                                     html  
    VOI2                                    html  
    VOIplot                                 html  
    VPA                                     html  
    YPR                                     html  
    YPR_CC                                  html  
    YPR_ML                                  html  
    avail                                   html  
    comp                                    html  
    curE                                    html  
    curE75                                  html  
    getAFC                                  html  
    getmov                                  html  
    getq                                    html  
    initialize-methods                      html  
    joinMSE                                 html  
    lmmodel-class                           html  
    makePerf                                html  
    matlenlim                               html  
    matlenlim2                              html  
    movfit                                  html  
    ourMSE                                  html  
    ourReefFish                             html  
    plot-methods                            html  
    plotOFL                                 html  
    qopt                                    html  
    replic8                                 html  
    runInMP                                 html  
    runMSE                                  html  
    runMSErobust                            html  
    slotlim                                 html  
    summary-methods                         html  
    wormplot                                html  
    writeCSV                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DLMtool)
Making 'packages.html' ... done