DNAshapeR

Package: DNAshapeR
Type: Package
Title: High-throughput prediction of DNA shape features
Version: 1.0.2
Date: 2016-04-25
Author: Tsu-Pei Chiu and Federico Comoglio
Maintainer: Tsu-Pei Chiu <tsupeich@usc.edu>
Description: DNAhapeR is an R/BioConductor package for ultra-fast,
high-throughput predictions of DNA shape features.
The package allows to predict,
visualize and encode DNA shape features
for statistical learning.
License: GPL-2
biocViews: StructuralPrediction, DNA3DStructure, Software
LazyData: TRUE
Depends: R (>= 3.3), GenomicRanges
Imports: Rcpp (>= 0.12.1), Biostrings, fields
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2016-05-16 06:02:53 UTC; biocbuild
VignetteBuilder: knitr
Suggests: AnnotationHub, knitr, rmarkdown, testthat,
BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19,
caret
RoxygenNote: 5.0.1

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DNAshapeR' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c OptionParser.cpp -o OptionParser.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c Output.cpp -o Output.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c ReadData.cpp -o ReadData.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c SNP.cpp -o SNP.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c ShapePrediction.cpp -o ShapePrediction.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c TableCompiler.cpp -o TableCompiler.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c map.cpp -o map.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c prediction.cpp -o prediction.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c properties.cpp -o properties.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include"   -fpic  -g -O2  -c utilities.cpp -o utilities.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o DNAshapeR.so OptionParser.o Output.o RcppExports.o ReadData.o SNP.o ShapePrediction.o TableCompiler.o map.o prediction.o properties.o utilities.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/DNAshapeR/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DNAshapeR'
    finding HTML links ... done
    DNAshapeR-package                       html  
    encodeKMerSeq                           html  
    encodeNstOrderShape                     html  
    encodeSeqShape                          html  
    getFasta                                html  
    getShape                                html  
    heatShape                               html  
    normalize                               html  
    normalizeShape                          html  
    plotShape                               html  
    readShape                               html  
    trackShape                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DNAshapeR)
Making 'packages.html' ... done