DSsim

Package: DSsim
Depends: graphics, splancs, mrds, mgcv, shapefiles, methods
Suggests: testthat, parallel, knitr, rmarkdown
Type: Package
Title: Distance Sampling Simulations
Version: 1.0.5
Date: 2016-06-17
LazyLoad: yes
Author: Laura Marshall <lhm@st-and.ac.uk>
Maintainer: Laura Marshall <lhm@st-and.ac.uk>
Description: Performs distance sampling simulations. It repeatedly
generates instances of a user defined population within a given survey
region, generates realisations of a survey design (currently these must
be pregenerated using Distance software <http://distancesampling.org/>) and
simulates the detection process. The data are then analysed
so that the results can be compared for accuracy and precision
across all replications. This will allow users to select survey
designs which will give them the best accuracy and precision
given their expectations about population distribution. Any uncertainty in
population distribution or population parameters can be included by running
the different survey designs for a number of different population
descriptions. An example simulation can be found in the help file
for make.simulation.
License: GPL (>= 2)
Collate: 'DDF.Data.R' 'generic.functions.R' 'DDF.Analysis.R'
'DS.Analysis.R' 'Survey.Design.R' 'PT.Design.R'
'PT.Systematic.Design.R' 'PT.Random.Design.R' 'LT.Design.R'
'LT.User.Specified.Design.R' 'LT.EqSpace.ZZ.Design.R'
'LT.EqAngle.ZZ.Design.R' 'LT.Random.Design.R'
'LT.Systematic.Design.R' 'Density.R' 'Population.Description.R'
'Region.R' 'Region.Table.R' 'Sample.Table.R' 'Obs.Table.R'
'Single.Obs.DDF.Data.R' 'Transect.R' 'Line.Transect.R'
'Detectability.R' 'Population.R' 'LT.Survey.Results.R'
'Survey.Results.R' 'DSM.Analysis.R' 'Simulation.R'
'Class.Constructors.R' 'Design.Summary.R' 'Survey.R'
'LT.Survey.R' 'Point.Transect.R' 'PT.Survey.R'
'Population.Summary.R' 'Simulation.Summary.R'
'Single.Obs.LT.Survey.R' 'Single.Obs.PT.Survey.R'
'accumulate.PP.results.R' 'add.dist.error.R'
'add.summary.results.R' 'calc.area.R'
'calc.poss.detect.dists.lines.R'
'calc.poss.detect.dists.points.R' 'check.intersection.R'
'check.shapefile.R' 'coords.from.shapefile.R' 'create.bins.R'
'data.for.distance.R' 'description.summary.R'
'generate.pop.D.R' 'generate.pop.N.R' 'get.ave.density.R'
'get.bound.box.R' 'get.line.sampler.info.R'
'get.point.sampler.info.R' 'get.shapefile.names.R'
'get.surface.constant.R' 'get.surface.gam.R' 'hn.detect.R'
'hr.detect.R' 'in.polygons.R' 'is.gap.R'
'modify.strata.for.analysis.R' 'rename.duplicates.R'
'save.sim.results.R' 'simulate.detections.R'
'single.simulation.loop.R' 'store.ddf.results.R'
'store.dht.results.R' 'uf.detect.R'
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2016-06-20 11:13:22 UTC; laura
Repository: CRAN
Date/Publication: 2016-06-20 20:25:41

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DSsim' ...
** package 'DSsim' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DSsim'
    finding HTML links ... done
    DDF.Analysis-class                      html  
    DDF.Data-class                          html  
    Density-class                           html  
    Design.Summary-class                    html  
    Detectability-class                     html  
    LT.Design-class                         html  
    LT.Survey-class                         html  
    LT.Survey.Results-class                 html  
    Line.Transect-class                     html  
    Obs.Table-class                         html  
    PT.Design-class                         html  
    PT.Survey-class                         html  
    Point.Transect-class                    html  
    Populatin.Summary-class                 html  
    Population-class                        html  
    Population.Description-class            html  
    Region-class                            html  
    Region.Table-class                      html  
    Sample.Table-class                      html  
    Simulation-class                        html  
    Simulation.Summary-class                html  
    Single.Obs.DDF.Data-class               html  
    Single.Obs.LT.Survey-class              html  
    Survey-class                            html  
    Survey.Design-class                     html  
    Survey.Results-class                    html  
    Transect-class                          html  
    add.hotspot-methods                     html  
    create.bins                             html  
    create.region.table-methods             html  
    create.sample.table-methods             html  
    create.survey.results-methods           html  
    data.for.distance                       html  
    description.summary                     html  
    generate.population-methods             html  
    generate.transects-methods              html  
    get.N-methods                           html  
    get.area-methods                        html  
    get.distance.data-methods               html  
    histogram.N.ests-methods                html  
    make.ddf.analysis.list                  html  
    make.density                            html  
    make.design                             html  
    make.detectability                      html  
    make.population.description             html  
    make.region                             html  
    make.simulation                         html  
    plot.DDF.Data-methods                   html  
    plot.Density-methods                    html  
    plot.LT.Survey.Results-methods          html  
    plot.Line.Transect-methods              html  
    plot.Point.Transect-methods             html  
    plot.Population-methods                 html  
    plot.Region-methods                     html  
    plot.Survey.Results-methods             html  
    rename.duplicates                       html  
    run-methods                             html  
    run.analysis-methods                    html  
    save.sim.results-methods                html  
    show.Simulation-methods                 html  
    show.Simulation.Summary-methods         html  
    summary.Simulation-methods              html  
    transects                               html  
** building package indices
** testing if installed package can be loaded
* DONE (DSsim)
Making 'packages.html' ... done