DatABEL

Package: DatABEL
Type: Package
Title: File-Based Access to Large Matrices Stored on HDD in Binary
Format
Version: 0.9-6
Date: 2015-03-30
Author: Yurii Aulchenko, Stepan Yakovenko, Erik Roos, Marcel Kempenaar, Maksim
Struchalin, Lennart C. Karssen
Maintainer: Lennart Karssen <lennart@karssen.org>
Depends: R (>= 2.4.0), methods, utils
Suggests: GenABEL, RUnit
Description: Provides an interface to the C++ FILEVECTOR library
facilitating analysis using large (giga- to tera-bytes) matrices.
Matrix storage is organized in a way that either columns or rows
are quickly accessible. DatABEL is primarily aimed to support
genome-wide association analyses e.g. using GenABEL, MixABEL and
ProbABEL.
License: GPL (>= 2)
Packaged: 2015-03-30 21:43:54 UTC; lennart
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2015-03-31 07:46:13

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DatABEL' ...
** package 'DatABEL' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c AbstractMatrix.cpp -o AbstractMatrix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c AbstractMatrix_R.cpp -o AbstractMatrix_R.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c CastUtils.cpp -o CastUtils.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c FileVector.cpp -o FileVector.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c FilteredMatrix.cpp -o FilteredMatrix.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c FilteredMatrix_R.cpp -o FilteredMatrix_R.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c Logger.cpp -o Logger.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c RealHandlerWrapper.cpp -o RealHandlerWrapper.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c ReusableFileHandle.cpp -o ReusableFileHandle.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c Transposer.cpp -o Transposer.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c convert_util.cpp -o convert_util.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c dautil.cpp -o dautil.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c frutil.cpp -o frutil.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c iterator.cpp -o iterator.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include   -DCOMPILE_WITH_R -fpic  -g -O2  -c iterator_functions.cpp -o iterator_functions.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o DatABEL.so AbstractMatrix.o AbstractMatrix_R.o CastUtils.o FileVector.o FilteredMatrix.o FilteredMatrix_R.o Logger.o RealHandlerWrapper.o ReusableFileHandle.o Transposer.o convert_util.o dautil.o frutil.o iterator.o iterator_functions.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/DatABEL/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DatABEL'
    finding HTML links ... done
    DatABEL-internal                        html  
    DatABEL-package                         html  
    apply2dfo                               html  
    databel-class                           html  
    databel                                 html  
    databel2matrix                          html  
    databel2text                            html  
    extract_text_file_columns               html  
    get_temporary_file_name                 html  
    make_empty_fvf                          html  
    matrix2databel                          html  
    process_lm_output                       html  
    text2databel                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DatABEL)
Making 'packages.html' ... done