DrugVsDisease

Package: DrugVsDisease
Type: Package
Title: Comparison of disease and drug profiles using Gene set
Enrichment Analysis
Version: 2.12.0
Date: 2015-04-13
Author: C. Pacini
Maintainer: j. Saez-Rodriguez <saezrodriguez@ebi.ac.uk>
Description: This package generates ranked lists of differential gene
expression for either disease or drug profiles. Input data can
be downloaded from Array Express or GEO, or from local CEL
files. Ranked lists of differential expression and associated
p-values are calculated using Limma. Enrichment scores
(Subramanian et al. PNAS 2005) are calculated to a reference
set of default drug or disease profiles, or a set of custom
data supplied by the user. Network visualisation of significant
scores are output in Cytoscape format.
LazyData: yes
LazyLoad: yes
License: GPL-3
Depends: R (>= 2.10), affy, limma, biomaRt, ArrayExpress, GEOquery,
DrugVsDiseasedata, cMap2data, qvalue
Imports: annotate, hgu133a.db, hgu133a2.db, hgu133plus2.db, RUnit,
BiocGenerics, xtable
biocViews: Microarray, GeneExpression, Clustering
NeedsCompilation: no
Packaged: 2016-05-05 03:46:41 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'DrugVsDisease' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'DrugVsDisease'
    finding HTML links ... done
    DrugVsDisease-package                   html  
    classifyprofile                         html  
    combineProfiles                         html  
    customClust                             html  
    customdb                                html  
    customedge                              html  
    customsif                               html  
    generateprofiles                        html  
    profiles                                html  
    selectrankedlists                       html  
    selprofile                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DrugVsDisease)
Making 'packages.html' ... done