EBImage

Package: EBImage
Version: 4.14.2
Title: Image processing and analysis toolbox for R
Encoding: UTF-8
Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
Maintainer: Andrzej Oleś <andrzej.oles@embl.de>
Depends:
Imports: BiocGenerics (>= 0.7.1), methods, graphics, grDevices, stats,
abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils
Suggests: BiocStyle, digest, knitr, rmarkdown
Description: EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
License: LGPL
LazyLoad: true
biocViews: Visualization
VignetteBuilder: knitr
URL: https://github.com/aoles/EBImage
BugReports: https://github.com/aoles/EBImage/issues
NeedsCompilation: yes
Packaged: 2016-05-16 01:40:27 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'EBImage' ...
** libs
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c EBImage.c -o EBImage.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c distmap.c -o distmap.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c drawCircle.c -o drawCircle.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c floodFill.cpp -o floodFill.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c haralick.c -o haralick.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c medianFilter.c -o medianFilter.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c morphology.c -o morphology.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c nativeRaster.c -o nativeRaster.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c normalize.c -o normalize.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c objects.c -o objects.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c ocontour.c -o ocontour.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c propagate.cpp -o propagate.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c spatial.c -o spatial.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c thresh.c -o thresh.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c tile.c -o tile.o
gcc -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c tools.c -o tools.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c watershed.cpp -o watershed.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o EBImage.so EBImage.o distmap.o drawCircle.o floodFill.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o watershed.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/EBImage/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'EBImage'
    finding HTML links ... done
    EBImage-defunct                         html  
    EBImage-deprecated                      html  
    EBImage                                 html  
    Image                                   html  
    bwlabel                                 html  
    channel                                 html  
    colorLabels                             html  
    colormap                                html  
    combine                                 html  
    computeFeatures                         html  
    display                                 html  
    distmap                                 html  
    drawCircle                              html  
    equalize                                html  
    fillHull                                html  
    filter2                                 html  
    floodFill                               html  
    gblur                                   html  
    io                                      html  
    finding level-2 HTML links ... done

    localCurvature                          html  
    medianFilter                            html  
    morphology                              html  
    normalize                               html  
    ocontour                                html  
    otsu                                    html  
    paintObjects                            html  
    propagate                               html  
    rmObjects                               html  
    spatial                                 html  
    stackObjects                            html  
    thresh                                  html  
    tile                                    html  
    transpose                               html  
    watershed                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (EBImage)
Making 'packages.html' ... done