ExpressionView

Package: ExpressionView
Version: 1.24.0
Date: Sep 23, 2012
Title: Visualize biclusters identified in gene expression data
Author: Andreas Luscher <andreas.luescher@a3.epfl.ch>
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Description: ExpressionView visualizes possibly overlapping biclusters
in a gene expression matrix. It can use the result of the ISA
method (eisa package) or the algorithms in the biclust
package or others. The viewer itself was developed using Adobe
Flex and runs in a flash-enabled web browser.
Depends: caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db,
AnnotationDbi
Imports: methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Suggests: ALL, hgu95av2.db, biclust, affy
biocViews: Classification, Visualization, Microarray, GeneExpression,
GO, KEGG
Collate: AllGenerics.R export.R launch.R order.R zzz.R
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2016-05-04 03:33:33 UTC; biocbuild

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'ExpressionView' ...
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c order.cpp -o order.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c orderclusters.cpp -o orderclusters.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o ExpressionView.so order.o orderclusters.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/ExpressionView/libs
** R
** inst
** preparing package for lazy loading
in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust"
** help
*** installing help indices
  converting help for package 'ExpressionView'
    finding HTML links ... done
    ExportEV                                html  
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/ExportEV.Rd:25: missing file link 'ISAModules'
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/ExportEV.Rd:28: missing file link 'ExpressionSet'
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/ExportEV.Rd:67: missing file link 'ExpressionSet'
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/ExportEV.Rd:73: missing file link 'biclust'
    ExpressionView-package                  html  
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/ExpressionView-package.Rd:17: missing file link 'ExpressionSet'
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/ExpressionView-package.Rd:20: missing file link 'biclust'
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/ExpressionView-package.Rd:44: missing file link 'biclust'
    LaunchEV                                html  
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/LaunchEV.Rd:19: missing file link 'biclust'
    OrderEV                                 html  
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/OrderEV.Rd:20: missing file link 'ISAModules'
Rd warning: /tmp/RtmpErlWKM/R.INSTALL394baa84c52/ExpressionView/man/OrderEV.Rd:61: missing file link 'biclust'
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ExpressionView)
Making 'packages.html' ... done