FBFsearch

Package: FBFsearch
Type: Package
Title: Algorithm for searching the space of Gaussian directed acyclic
graphical models through moment fractional Bayes factors
Version: 1.0
Date: 2013-04-12
Author: Davide Altomare, Guido Consonni and Luca La Rocca
Maintainer: Davide Altomare <davide.altomare@gmail.com>
Description: We propose an objective Bayesian algorithm for searching
the space of Gaussian directed acyclic graphical models when
the variables are assumed to satisfy a given ordering. The
approach used is based on non-local parameter priors and thus
it is suitable for learning sparse graphs. The algorithm is
implemented in C++ using the open-source library Armadillo.
License: GPL (>= 2)
Depends: Rcpp (>= 0.9.13), RcppArmadillo (>= 0.3.2.4)
LinkingTo: Rcpp, RcppArmadillo
Packaged: 2013-04-12 18:55:49 UTC; davide
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2013-04-13 06:39:46

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'FBFsearch' ...
** package 'FBFsearch' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include"   -fpic  -g -O2  -c FBFsearch.cpp -o FBFsearch.o
FBFsearch.cpp: In function 'arma::vec sub_elem_eq(arma::vec, arma::vec, double)':
FBFsearch.cpp:73:49: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   if(!iw.is_empty()){v=v.elem(iw);}else{v=math::nan();}
                                                 ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:73:53: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   if(!iw.is_empty()){v=v.elem(iw);}else{v=math::nan();}
                                                     ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp: In function 'arma::vec mov_tree(arma::mat, arma::vec, int, arma::vec, int)':
FBFsearch.cpp:243:72: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    if(!imov.is_empty()){mov=mov.elem(imov); mov=mov-1;} else{mov=math::nan();}
                                                                        ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:243:76: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    if(!imov.is_empty()){mov=mov.elem(imov); mov=mov-1;} else{mov=math::nan();}
                                                                            ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:246:20: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
  } else {mov=math::nan();}
                    ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:246:24: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
  } else {mov=math::nan();}
                        ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp: In function 'double log_FBF_Ga_Gb(arma::vec, arma::vec, int, arma::mat, arma::mat, int, double, double)':
FBFsearch.cpp:296:73: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   iw=find(pa1!=e1); if(!iw.is_empty()){pa0=pa1.elem(iw);}else{pa0=math::nan();}
                                                                         ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:296:77: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   iw=find(pa1!=e1); if(!iw.is_empty()){pa0=pa1.elem(iw);}else{pa0=math::nan();}
                                                                             ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:307:23: warning: 'const T1& arma::sympd(const arma::Base<typename T1::elem_type, T1>&) [with T1 = arma::Mat<double>; typename T1::elem_type = double]' is deprecated [-Wdeprecated-declarations]
   invXtX=inv(sympd(XtX));
                       ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:427:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:315:1: note: declared here
 sympd(const Base<typename T1::elem_type,T1>& X)
 ^
FBFsearch.cpp:314:34: warning: 'static eT arma::Math<eT>::pi() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_w_1=(-n*(1-b)/2)*log(math::pi()*b*S2);
                                  ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:29:29: note: declared here
   arma_deprecated static eT pi()        { return eT(3.1415926535897932384626433832795028841971693993751058209749445923078164062862089986280348253421170679); }  // use datum::pi instead
                             ^
FBFsearch.cpp:314:37: warning: 'static eT arma::Math<eT>::pi() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_w_1=(-n*(1-b)/2)*log(math::pi()*b*S2);
                                     ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:29:29: note: declared here
   arma_deprecated static eT pi()        { return eT(3.1415926535897932384626433832795028841971693993751058209749445923078164062862089986280348253421170679); }  // use datum::pi instead
                             ^
FBFsearch.cpp:315:19: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_num1=-math::inf();
                   ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:315:23: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_num1=-math::inf();
                       ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:316:19: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_den1=-math::inf();
                   ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:316:23: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_den1=-math::inf();
                       ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:343:24: warning: 'const T1& arma::sympd(const arma::Base<typename T1::elem_type, T1>&) [with T1 = arma::Mat<double>; typename T1::elem_type = double]' is deprecated [-Wdeprecated-declarations]
    invXtX=inv(sympd(XtX));
                        ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:427:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/fn_misc.hpp:315:1: note: declared here
 sympd(const Base<typename T1::elem_type,T1>& X)
 ^
FBFsearch.cpp:348:36: warning: 'static eT arma::Math<eT>::pi() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_w_0=(-(n*(1-b)/2))*log(math::pi()*b*S2)+log_num0i0-log_den0i0;
                                    ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:29:29: note: declared here
   arma_deprecated static eT pi()        { return eT(3.1415926535897932384626433832795028841971693993751058209749445923078164062862089986280348253421170679); }  // use datum::pi instead
                             ^
FBFsearch.cpp:348:39: warning: 'static eT arma::Math<eT>::pi() [with eT = double]' is deprecated [-Wdeprecated-declarations]
   log_w_0=(-(n*(1-b)/2))*log(math::pi()*b*S2)+log_num0i0-log_den0i0;
                                       ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:29:29: note: declared here
   arma_deprecated static eT pi()        { return eT(3.1415926535897932384626433832795028841971693993751058209749445923078164062862089986280348253421170679); }  // use datum::pi instead
                             ^
FBFsearch.cpp: In function 'arma::field<arma::Mat<double> > FBF_heart(double, arma::mat, arma::vec, double, arma::vec, arma::mat, double, double, double, double)':
FBFsearch.cpp:379:54: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    tree=zeros<mat>(n_tot_mod*lcv,2); tree.fill(math::nan());
                                                      ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:379:58: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    tree=zeros<mat>(n_tot_mod*lcv,2); tree.fill(math::nan());
                                                          ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:380:16: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    ltree=math::nan();
                ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:380:20: warning: 'static eT arma::Math<eT>::nan() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    ltree=math::nan();
                    ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:53:29: note: declared here
   arma_deprecated static eT nan()       { return priv::Datum_helper::nan<eT>(); }  // use datum::nan instead
                             ^
FBFsearch.cpp:383:23: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    sum_log_FBF=-math::inf(); 
                       ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:383:27: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    sum_log_FBF=-math::inf(); 
                           ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:384:51: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    log_sume=zeros<vec>(lcv); log_sume.fill(-math::inf());
                                                   ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:384:55: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    log_sume=zeros<vec>(lcv); log_sume.fill(-math::inf());
                                                       ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:387:24: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    sum_log_RSMP=-math::inf();
                        ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
FBFsearch.cpp:387:28: warning: 'static eT arma::Math<eT>::inf() [with eT = double]' is deprecated [-Wdeprecated-declarations]
    sum_log_RSMP=-math::inf();
                            ^
In file included from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo:114:0,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46,
                 from /home/ddbj/local/lib64/R/library/RcppArmadillo/include/RcppArmadillo.h:31,
                 from FBFsearch.cpp:3:
/home/ddbj/local/lib64/R/library/RcppArmadillo/include/armadillo_bits/constants_old.hpp:56:29: note: declared here
   arma_deprecated static eT inf()       { return priv::Datum_helper::inf<eT>(); }  // use datum::inf instead
                             ^
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o FBFsearch.so FBFsearch.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/FBFsearch/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'FBFsearch'
    finding HTML links ... done
    FBF_GS                                  html  
    FBF_LS                                  html  
    FBF_RS                                  html  
    dataHuman                               html  
    dataPub                                 html  
    dataSim100                              html  
    dataSim200                              html  
    dataSim50                               html  
    dataSim6                                html  
    dataSimHuman                            html  
** building package indices
** testing if installed package can be loaded
* DONE (FBFsearch)
Making 'packages.html' ... done