Familias

Package: Familias
Type: Package
Title: Probabilities for Pedigrees Given DNA Data
Version: 2.4
Date: 2016-02-15
Author: Petter Mostad, Thore Egeland, Ivar Simonsson
Maintainer: Petter Mostad <mostad@chalmers.se>
Depends: R (>= 1.8.0), kinship2, paramlink, Rsolnp
Description:
An interface to the core Familias functions (www.familias.name),
which are programmed in C++.
License: GPL-2
LazyLoad: yes
URL: http://www.familias.name
NeedsCompilation: yes
Packaged: 2016-02-18 09:47:26 UTC; mostad
Repository: CRAN
Date/Publication: 2016-02-18 15:13:56

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Familias' ...
** package 'Familias' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Element.cpp -o Element.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c FamInterface.cpp -o FamInterface.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c GroupOfPersons.cpp -o GroupOfPersons.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Node.cpp -o Node.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c Pedigree.cpp -o Pedigree.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c PedigreeList.cpp -o PedigreeList.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c PedigreeSet.cpp -o PedigreeSet.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c aldata.cpp -o aldata.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c alsys.cpp -o alsys.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c cutset.cpp -o cutset.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c family.cpp -o family.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c help.cpp -o help.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c main.cpp -o main.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c odds.cpp -o odds.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c pater.cpp -o pater.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c person.cpp -o person.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c read.cpp -o read.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c special.cpp -o special.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -c table.cpp -o table.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Familias.so Element.o FamInterface.o GroupOfPersons.o Node.o Pedigree.o PedigreeList.o PedigreeSet.o aldata.o alsys.o cutset.o family.o help.o main.o odds.o pater.o person.o read.o special.o table.o -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Familias/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Familias'
    finding HTML links ... done
    ConvertPed                              html  
    Familias-package                        html  
    FamiliasLocus                           html  
    FamiliasPedigree                        html  
    FamiliasPosterior                       html  
    FamiliasPrior                           html  
    NorwegianFrequencies                    html  
    plot.FamiliasPedigree                   html  
** building package indices
** testing if installed package can be loaded
* DONE (Familias)
Making 'packages.html' ... done