FastHCS

Package: FastHCS
Type: Package
Title: Robust Algorithm for Principal Component Analysis
Version: 0.0.5
Date: 2013-01-13
Depends: R (>= 3.1.1), matrixStats, robustbase
Suggests: mvtnorm
LinkingTo: Rcpp, RcppEigen
SystemRequirements: C++11
Description: The FastHCS algorithm of Schmitt and Vakili (2014) for high-dimensional, robust PCA modelling and associated outlier detection and diagnostic tools.
License: GPL (>= 2)
LazyLoad: yes
Authors@R: person("Kaveh", "Vakili", email = "vakili.kaveh.email@gmail.com", role = c("aut", "cre"))
Author: Kaveh Vakili [aut, cre]
Maintainer: Kaveh Vakili <vakili.kaveh.email@gmail.com>
NeedsCompilation: yes
Packaged: 2015-05-18 19:08:13 UTC; kaveh
Repository: CRAN
Date/Publication: 2015-05-19 08:45:07

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'FastHCS' ...
** package 'FastHCS' successfully unpacked and MD5 sums checked
** libs
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DEIGEN_DONT_PARALLELIZE -fopenmp -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2 -c FastHCS.cpp -o FastHCS.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from FastHCS.cpp:18:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/random:40,
                 from /usr/include/c++/5/bits/stl_algo.h:66,
                 from /usr/include/c++/5/algorithm:62,
                 from FastHCS.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from FastHCS.cpp:18:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/random:40,
                 from /usr/include/c++/5/bits/stl_algo.h:66,
                 from /usr/include/c++/5/algorithm:62,
                 from FastHCS.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -std=c++11 -I/home/ddbj/local/lib64/R/include -DNDEBUG -I../inst/include -DEIGEN_DONT_PARALLELIZE -fopenmp -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2 -c psdo.cpp -o psdo.o
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from psdo.cpp:18:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:973:28: warning: 'template<class _Operation> class std::binder2nd' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder2nd<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/random:40,
                 from /usr/include/c++/5/bits/stl_algo.h:66,
                 from /usr/include/c++/5/algorithm:62,
                 from psdo.cpp:1:
/usr/include/c++/5/backward/binders.h:143:11: note: declared here
     class binder2nd
           ^
In file included from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Core:276:0,
                 from /home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/Dense:1,
                 from psdo.cpp:18:
/home/ddbj/local/lib64/R/library/RcppEigen/include/Eigen/src/Core/Functors.h:977:28: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
 struct functor_traits<std::binder1st<T> >
                            ^
In file included from /usr/include/c++/5/bits/stl_function.h:1128:0,
                 from /usr/include/c++/5/string:48,
                 from /usr/include/c++/5/random:40,
                 from /usr/include/c++/5/bits/stl_algo.h:66,
                 from /usr/include/c++/5/algorithm:62,
                 from psdo.cpp:1:
/usr/include/c++/5/backward/binders.h:108:11: note: declared here
     class binder1st
           ^
g++ -std=c++11 -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o FastHCS.so FastHCS.o psdo.o -fopenmp -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/FastHCS/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'FastHCS'
    finding HTML links ... done
    DnaAlteration                           html  
    FHCSkernelEVD                           html  
    FHCSnumStarts                           html  
    FHCSpsdo                                html  
    FastHCS-package                         html  
    FastHCS                                 html  
    MultipleFeatures                        html  
    Tablets                                 html  
    compPcaParams                           html  
    plot.FastHCS                            html  
    signFlip                                html  
** building package indices
** testing if installed package can be loaded
* DONE (FastHCS)
Making 'packages.html' ... done