Last data update: 2014.03.03
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FisHiCal
Package: FisHiCal
Type: Package
Title: Iterative FISH-based Calibration of Hi-C Data
Version: 1.1
Date: 2014-06-20
Author: Yoli Shavit, Fiona Kathryn Hamey and Pietro Lio'
Maintainer: Yoli Shavit <ys388@cam.ac.uk>
Description: FisHiCal integrates Hi-C and FISH data, offering a modular and easy-to-use tool for chromosomal spatial analysis.
License: GPL
Depends: R (>= 3.0.2), igraph, RcppArmadillo (>= 0.4.100.2.1)
Suggests: rgl
LinkingTo: Rcpp (>= 0.11.1), RcppArmadillo (>= 0.4.100.2.1)
Packaged: 2014-06-22 12:21:25 UTC; ys388
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-06-24 01:22:21
Install log
* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'FisHiCal' ...
** package 'FisHiCal' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppArmadillo/include" -fpic -g -O2 -c smacof.cpp -o smacof.o
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o FisHiCal.so RcppExports.o smacof.o -L/home/ddbj/local/lib64/R/lib -lRlapack -L/home/ddbj/local/lib64/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/FisHiCal/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
converting help for package 'FisHiCal'
finding HTML links ... done
FisHiCal-package html
calibHiC html
calibrate html
conf html
findMatchingIndices html
getInfoLevelForChr html
hic html
lsmacof html
match html
plotInc html
finding level-2 HTML links ... done
prepareCalib html
prepareData html
searchInc html
spatialInc html
summaryInc html
updateCalib html
** building package indices
** testing if installed package can be loaded
* DONE (FisHiCal)
Making 'packages.html' ... done
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