FunCluster

Package: FunCluster
Version: 1.09
Date: 2008-06-19
Title: Functional Profiling of Microarray Expression Data
Author: Corneliu Henegar <corneliu@henegar.info>
Maintainer: Corneliu Henegar <corneliu@henegar.info>
Depends: R (>= 2.10), Hmisc, cluster
Description: FunCluster performs a functional analysis of microarray
expression data based on Gene Ontology & KEGG functional
annotations. From expression data and functional annotations
FunCluster builds classes of putatively co-regulated biological
processes through a specially designed clustering procedure.
License: GPL (>= 2)
URL: http://corneliu.henegar.info/FunCluster.htm
Packaged: 2012-07-23 09:22:53 UTC; ripley
Repository: CRAN
Date/Publication: 2012-07-23 10:35:30

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'FunCluster' ...
** package 'FunCluster' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'FunCluster'
    finding HTML links ... done
    AnnotationIndirecte                     html  
    Annotations                             html  
    ChargerKegg                             html  
    FunCluster.R-package                    html  
    FunCluster                              html  
    GO.terms.hierarchy                      html  
    GO.terms.name                           html  
    GeneInfo                                html  
    GeneInfoSC                              html  
    HS.GO.DIR.BP.file.annot                 html  
    HS.GO.DIR.CC.file.annot                 html  
    HS.GO.DIR.MF.file.annot                 html  
    HS.GO.IND.BP.file.annot                 html  
    HS.GO.IND.CC.file.annot                 html  
    HS.GO.IND.MF.file.annot                 html  
    HS.KEGG.file.annot                      html  
    HS.locus.cyto                           html  
    HS.locus.name                           html  
    KEGG.terms.name                         html  
    Kegg                                    html  
    MM.GO.DIR.BP.file.annot                 html  
    MM.GO.DIR.CC.file.annot                 html  
    MM.GO.DIR.MF.file.annot                 html  
    MM.GO.IND.BP.file.annot                 html  
    MM.GO.IND.CC.file.annot                 html  
    MM.GO.IND.MF.file.annot                 html  
    MM.KEGG.file.annot                      html  
    MM.locus.cyto                           html  
    MM.locus.name                           html  
    MakeCorrespondanceLLGO                  html  
    MakeGoHierarchy                         html  
    MakeGoTerms                             html  
    MakeLocusNames                          html  
    MiseEnFormeKegg                         html  
    MiseEnFormeKeggSC                       html  
    SC.GO.DIR.BP.file.annot                 html  
    SC.GO.DIR.CC.file.annot                 html  
    SC.GO.DIR.MF.file.annot                 html  
    SC.GO.IND.BP.file.annot                 html  
    SC.GO.IND.CC.file.annot                 html  
    SC.GO.IND.MF.file.annot                 html  
    SC.KEGG.file.annot                      html  
    SC.locus.cyto                           html  
    SC.locus.name                           html  
    TroisiemeFiltrage                       html  
    adipose                                 html  
    annot.date                              html  
    annot.list                              html  
    annotate                                html  
    cluster.c                               html  
    clusterm.cc                             html  
    clusterm.cs                             html  
    down                                    html  
    f.version                               html  
    fdr                                     html  
    fdr.adjust                              html  
    fdr.basic                               html  
    fdr.master                              html  
    filter.genes                            html  
    gene.correl                             html  
    genes.lst                               html  
    goAndLL                                 html  
    insulin                                 html  
    location.analysis                       html  
    main.loop                               html  
    pclust                                  html  
    preliminary                             html  
    prop.alt                                html  
    pterm                                   html  
    pvalues                                 html  
    ref.list                                html  
    resclust                                html  
    resterm                                 html  
    storey                                  html  
    term.compare                            html  
    up                                      html  
** building package indices
** testing if installed package can be loaded
* DONE (FunCluster)
Making 'packages.html' ... done