Funclustering

Package: Funclustering
Type: Package
Title: A package for functional data clustering.
Version: 1.0.1
Date: 2013-12-20
Author: Mohamed Soueidatt <mohamed.soueidatt@inria.fr>, <msoueidatt@gmail.com>*.
Copyright: Mohamed Soueidatt
Maintainer: Vincent KUBICKI <vincent.kubicki@inria.fr>
Description: This packages proposes a model-based clustering algorithm for
multivariate functional data. The parametric mixture model, based on the
assumption of normality of the principal components resulting from a
multivariate functional PCA, is estimated by an EM-like algorithm. The main
advantage of the proposed algorithm is its ability to take into account the
dependence among curves.
License: GPL (>= 2)
Depends: fda (>= 2.2.6), R (>= 2.15.1), methods
Imports: Rcpp (>= 0.10.3)
LinkingTo: Rcpp, RcppEigen
SystemRequirements: GNU make
Collate: 'cpp_data.R' 'funclust.r' 'input.R' 'output.R' 'plot.R'
'mfpca.R' 'harmCut.r' 'mfpcaPlot.R'
Packaged: 2014-01-15 08:59:14 UTC; modal
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-01-15 11:52:11

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'Funclustering' ...
** package 'Funclustering' successfully unpacked and MD5 sums checked
** libs
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -DRPACKAGE -fopenmp -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c RfunclustMain.cpp -o RfunclustMain.o
g++ -I/home/ddbj/local/lib64/R/include -DNDEBUG -DRPACKAGE -fopenmp -I/usr/local/include -I"/home/ddbj/local/lib64/R/library/Rcpp/include" -I"/home/ddbj/local/lib64/R/library/RcppEigen/include"   -fpic  -g -O2  -c mfpca.cpp -o mfpca.o
(cd ./Funclustering/ && make)
make[1]: Entering directory '/tmp/RtmpYc6MNp/R.INSTALL1002683661cc/Funclustering/src/Funclustering'
g++ -g -O2  -fpic -DNDEBUG -DRPACKAGE -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" src/IAlgo/EMAlgo.cpp -c -o src/IAlgo/EMAlgo.o
g++ -g -O2  -fpic -DNDEBUG -DRPACKAGE -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" src/IAlgo/IAlgo.cpp -c -o src/IAlgo/IAlgo.o
g++ -g -O2  -fpic -DNDEBUG -DRPACKAGE -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" src/IModel/IModel.cpp -c -o src/IModel/IModel.o
g++ -g -O2  -fpic -DNDEBUG -DRPACKAGE -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" src/IModel/Model.cpp -c -o src/IModel/Model.o
g++ -g -O2  -fpic -DNDEBUG -DRPACKAGE -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" src/IStrategy/IStrategy.cpp -c -o src/IStrategy/IStrategy.o
g++ -g -O2  -fpic -DNDEBUG -DRPACKAGE -I"/home/ddbj/local/lib64/R/library/RcppEigen/include" src/IStrategy/SimpleStrategy.cpp -c -o src/IStrategy/SimpleStrategy.o
ar -rc libFunclustering.a src/IAlgo/EMAlgo.o src/IAlgo/IAlgo.o src/IModel/IModel.o src/IModel/Model.o src/IStrategy/IStrategy.o src/IStrategy/SimpleStrategy.o
make[1]: Leaving directory '/tmp/RtmpYc6MNp/R.INSTALL1002683661cc/Funclustering/src/Funclustering'
ranlib ./Funclustering/libFunclustering.a
g++ -shared -L/home/ddbj/local/lib64/R/lib -L/usr/local/lib64 -o Funclustering.so RfunclustMain.o mfpca.o -fopenmp -L./Funclustering/ -lFunclustering -L/home/ddbj/local/lib64/R/lib -lR
installing to /home/ddbj/local/lib64/R/library/Funclustering/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'Funclustering'
    finding HTML links ... done
    Funclustering-package                   html  
    Input-class                             html  
    Output-class                            html  
    cppMultiData                            html  
    cppUniData                              html  
    funclust                                html  
    harmsCut                                html  
    mfpca                                   html  
    mfpcaPlot                               html  
    plotOC                                  html  
    plotfd                                  html  
** building package indices
** testing if installed package can be loaded
* DONE (Funclustering)
Making 'packages.html' ... done