GOGANPA

Package: GOGANPA
Type: Package
Title: GO-Functional-Network-based Gene-Set-Analysis
Version: 1.0
Date: 2011-12-30
Author: Billy Chang
Maintainer: Billy Chang <billy.chang@utoronto.ca>
Description: Accounting for genes' functional-non-equivalence within pathways in classical Gene-set-analysis.
Depends: R (>= 2.10), GANPA, WGCNA
Suggests: GANPA, WGCNA, GANPAdata
License: GPL-2
Packaged: 2012-01-02 17:37:23 UTC; billyhw
Repository: CRAN
Date/Publication: 2012-01-03 07:44:00

Install log

* installing to library '/home/ddbj/local/lib64/R/library'
* installing *source* package 'GOGANPA' ...
** package 'GOGANPA' successfully unpacked and MD5 sums checked
** R
** data
** preparing package for lazy loading
==========================================================================
*
*  Package WGCNA 1.51 loaded.
*
*    Important note: It appears that your system supports multi-threading,
*    but it is not enabled within WGCNA in R. 
*    To allow multi-threading within WGCNA with all available cores, use 
*
*          allowWGCNAThreads()
*
*    within R. Use disableWGCNAThreads() to disable threading if necessary.
*    Alternatively, set the following environment variable on your system:
*
*          ALLOW_WGCNA_THREADS=<number_of_processors>
*
*    for example 
*
*          ALLOW_WGCNA_THREADS=4
*
*    To set the environment variable in linux bash shell, type 
*
*           export ALLOW_WGCNA_THREADS=4
*
*     before running R. Other operating systems or shells will
*     have a similar command to achieve the same aim.
*
==========================================================================


** help
*** installing help indices
  converting help for package 'GOGANPA'
    finding HTML links ... done
    GOGANPA-package                         html  
    GOGANPA                                 html  
    getGNET                                 html  
    selectRho                               html  
    simMatSmall                             html  
** building package indices
** testing if installed package can be loaded
==========================================================================
*
*  Package WGCNA 1.51 loaded.
*
*    Important note: It appears that your system supports multi-threading,
*    but it is not enabled within WGCNA in R. 
*    To allow multi-threading within WGCNA with all available cores, use 
*
*          allowWGCNAThreads()
*
*    within R. Use disableWGCNAThreads() to disable threading if necessary.
*    Alternatively, set the following environment variable on your system:
*
*          ALLOW_WGCNA_THREADS=<number_of_processors>
*
*    for example 
*
*          ALLOW_WGCNA_THREADS=4
*
*    To set the environment variable in linux bash shell, type 
*
*           export ALLOW_WGCNA_THREADS=4
*
*     before running R. Other operating systems or shells will
*     have a similar command to achieve the same aim.
*
==========================================================================


* DONE (GOGANPA)
Making 'packages.html' ... done